Plasmid NZ_LR890387.1

Sequence

Nucleotide Information

Accession NZ_LR890387.1
Description Klebsiella pneumoniae isolate INF333 plasmid 4, complete sequence
Source refseq
Topology circular
Length 1916 bp
GC Content 0.51 %
Created at NCBI Oct. 30, 2020



Assembly

Genome Data Information

Accession GCF_904864595.1
Assembly Coverage 89


Biosample

Curated Collection Information
Accession 6112228

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 37.8457S;144.9821E
Original Query Type coordinates
Coordinates (Lat/Lon) -37.85/144.98
Address Alfred Hospital, 55, Commercial Road, Melbourne, City of Melbourne, Victoria, 3004, Australia

ECOSYSTEM
Original Query Homo sapiens,sputum
Classification host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query pneumonia
DOID/SYMP
  • Pneumonia (DOID:552 )
    • A lung disease that involves lung parenchyma or alveolar inflammation and abnormal alveolar filling with fluid (consolidation and exudation). It results from a variety of causes including infection with bacteria, viruses, fungi or parasites, and chemical or physical injury to the lungs. It is accompanied by fever, chills, cough, and difficulty in breathing.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_LR890489.1 See Comparison
NZ_LR890190.1 See Comparison
NZ_LR890208.1 See Comparison
NZ_LR890394.1 See Comparison
NZ_LR890234.1 See Comparison
NZ_LR890348.1 See Comparison
NZ_LR890568.1 See Comparison
NZ_LR890499.1 See Comparison
LR890561.1 See Comparison
LR890535.1 See Comparison
LR890455.1 See Comparison
LR890244.1 See Comparison
NZ_CP056198.1 See Comparison
NZ_CP056860.1 See Comparison
NZ_CP084817.1 See Comparison
NZ_CP142976.1 See Comparison
NZ_CP089002.1 See Comparison
CP024520.1 See Comparison
NZ_CP070040.1 See Comparison
NZ_CP056380.1 See Comparison
CP056630.1 See Comparison
NZ_CP069877.1 See Comparison
NZ_CP070090.1 See Comparison
NZ_LR890489.1 See Comparison
NZ_LR890190.1 See Comparison
NZ_LR890208.1 See Comparison
NZ_LR890394.1 See Comparison
NZ_LR890234.1 See Comparison
NZ_CP142976.1 See Comparison
NZ_LR890348.1 See Comparison
NZ_LR890568.1 See Comparison
NZ_LR890499.1 See Comparison
NZ_CP056198.1 See Comparison
NZ_CP056860.1 See Comparison
NZ_CP084817.1 See Comparison
LR890561.1 See Comparison
LR890535.1 See Comparison
LR890455.1 See Comparison
LR890244.1 See Comparison
NZ_CP089002.1 See Comparison
CP024520.1 See Comparison
NZ_CP056380.1 See Comparison
CP056630.1 See Comparison
NZ_CP070040.1 See Comparison
NZ_CP069877.1 See Comparison
NZ_CP070090.1 See Comparison
LR890561.1 See Comparison
NZ_LR890489.1 See Comparison
NZ_LR890190.1 See Comparison
NZ_LR890208.1 See Comparison
NZ_LR890394.1 See Comparison
NZ_LR890234.1 See Comparison
NZ_LR890348.1 See Comparison
NZ_LR890568.1 See Comparison
NZ_LR890499.1 See Comparison
LR890535.1 See Comparison
LR890455.1 See Comparison
LR890244.1 See Comparison
CP024520.1 See Comparison
NZ_CP056198.1 See Comparison
NZ_CP056860.1 See Comparison
NZ_CP089002.1 See Comparison
NZ_CP084817.1 See Comparison
NZ_CP070040.1 See Comparison
NZ_CP142976.1 See Comparison
NZ_CP056380.1 See Comparison
CP056630.1 See Comparison
NZ_CP069877.1 See Comparison
NZ_CP070090.1 See Comparison
NZ_LR890489.1 See Comparison
NZ_LR890348.1 See Comparison
NZ_LR890568.1 See Comparison
NZ_LR890190.1 See Comparison
NZ_LR890499.1 See Comparison
NZ_LR890208.1 See Comparison
NZ_LR890394.1 See Comparison
NZ_LR890234.1 See Comparison
NZ_CP056860.1 See Comparison
LR890561.1 See Comparison
LR890535.1 See Comparison
LR890455.1 See Comparison
LR890244.1 See Comparison
NZ_CP084817.1 See Comparison
NZ_CP056198.1 See Comparison
NZ_CP089002.1 See Comparison
NZ_CP056380.1 See Comparison
CP024520.1 See Comparison
NZ_CP142976.1 See Comparison
NZ_CP089002.1 See Comparison
NZ_CP070040.1 See Comparison
NZ_CP069877.1 See Comparison
NZ_CP070090.1 See Comparison
NZ_LR890348.1 See Comparison
NZ_LR890568.1 See Comparison
NZ_LR890387.1 See Comparison
NZ_LR890499.1 See Comparison
CP056630.1 See Comparison
NZ_LR890489.1 See Comparison
NZ_LR890190.1 See Comparison
NZ_LR890208.1 See Comparison
NZ_LR890394.1 See Comparison
NZ_LR890234.1 See Comparison
LR890561.1 See Comparison
LR890535.1 See Comparison
LR890455.1 See Comparison
LR890244.1 See Comparison
NZ_CP056198.1 See Comparison
NZ_CP056860.1 See Comparison
NZ_LR890190.1 See Comparison
CP056630.1 See Comparison
NZ_CP070040.1 See Comparison
NZ_CP069877.1 See Comparison
NZ_CP070090.1 See Comparison
NZ_CP084817.1 See Comparison
CP024520.1 See Comparison
NZ_CP142976.1 See Comparison
NZ_CP056380.1 See Comparison
NZ_LR890208.1 See Comparison
NZ_LR890394.1 See Comparison
NZ_LR890234.1 See Comparison
NZ_LR890348.1 See Comparison
NZ_LR890489.1 See Comparison
NZ_LR890568.1 See Comparison
NZ_LR890499.1 See Comparison
NZ_CP056198.1 See Comparison
LR890561.1 See Comparison
LR890535.1 See Comparison
LR890455.1 See Comparison
LR890244.1 See Comparison
NZ_CP056860.1 See Comparison
CP024520.1 See Comparison
NZ_CP089002.1 See Comparison
NZ_CP084817.1 See Comparison
NZ_CP056380.1 See Comparison
NZ_CP142976.1 See Comparison
NZ_LR890190.1 See Comparison
CP056630.1 See Comparison
NZ_CP070040.1 See Comparison
NZ_CP069877.1 See Comparison
NZ_CP070090.1 See Comparison
NZ_LR890489.1 See Comparison
NZ_LR890208.1 See Comparison
NZ_LR890394.1 See Comparison
NZ_LR890234.1 See Comparison
NZ_LR890348.1 See Comparison
NZ_LR890568.1 See Comparison
NZ_LR890499.1 See Comparison
NZ_CP056198.1 See Comparison
LR890561.1 See Comparison
LR890535.1 See Comparison
LR890455.1 See Comparison
LR890244.1 See Comparison
NZ_CP056860.1 See Comparison
NZ_CP089002.1 See Comparison
NZ_CP084817.1 See Comparison
CP056630.1 See Comparison
NZ_CP142976.1 See Comparison
CP024520.1 See Comparison
NZ_CP056380.1 See Comparison
NZ_CP070040.1 See Comparison
NZ_CP069877.1 See Comparison
NZ_CP070090.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2