Plasmid LR890561.1

Sequence

Nucleotide Information

Accession LR890561.1
Description Klebsiella pneumoniae isolate INF302-sc-2280090 genome assembly, plasmid: 6
Source insd
Topology circular
Length 1916 bp
GC Content 0.51 %
Created at NCBI Oct. 30, 2020



Biosample

Curated Collection Information
Accession 4042666

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Australia
Original Query Type name
Coordinates (Lat/Lon) -24.78/134.76
Address Australia

ECOSYSTEM
Original Query Homo sapiens,sputum
Classification host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diseased
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP089002.1 See Comparison
NZ_CP084817.1 See Comparison
CP024520.1 See Comparison
NZ_CP142976.1 See Comparison
CP056630.1 See Comparison
NZ_CP056380.1 See Comparison
NZ_LR890489.1 See Comparison
NZ_CP070040.1 See Comparison
NZ_CP069877.1 See Comparison
NZ_CP070090.1 See Comparison
NZ_LR890190.1 See Comparison
NZ_LR890208.1 See Comparison
NZ_LR890394.1 See Comparison
NZ_LR890234.1 See Comparison
NZ_CP056380.1 See Comparison
NZ_LR890348.1 See Comparison
NZ_LR890568.1 See Comparison
NZ_LR890387.1 See Comparison
NZ_LR890499.1 See Comparison
NZ_CP056198.1 See Comparison
NZ_CP056860.1 See Comparison
NZ_CP089002.1 See Comparison
NZ_CP084817.1 See Comparison
CP024520.1 See Comparison
NZ_CP142976.1 See Comparison
LR890535.1 See Comparison
LR890455.1 See Comparison
LR890244.1 See Comparison
CP056630.1 See Comparison
NZ_LR890394.1 See Comparison
NZ_CP070040.1 See Comparison
NZ_CP069877.1 See Comparison
NZ_CP070090.1 See Comparison
NZ_LR890234.1 See Comparison
NZ_LR890348.1 See Comparison
NZ_LR890489.1 See Comparison
NZ_LR890568.1 See Comparison
NZ_LR890387.1 See Comparison
NZ_LR890499.1 See Comparison
NZ_CP056198.1 See Comparison
NZ_LR890190.1 See Comparison
NZ_LR890208.1 See Comparison
LR890535.1 See Comparison
LR890455.1 See Comparison
LR890244.1 See Comparison
NZ_CP056860.1 See Comparison
NZ_CP056380.1 See Comparison
NZ_CP089002.1 See Comparison
NZ_CP084817.1 See Comparison
CP024520.1 See Comparison
NZ_CP142976.1 See Comparison
CP056630.1 See Comparison
NZ_LR890489.1 See Comparison
NZ_LR890234.1 See Comparison
NZ_CP070040.1 See Comparison
NZ_CP069877.1 See Comparison
NZ_CP070090.1 See Comparison
NZ_LR890190.1 See Comparison
NZ_LR890348.1 See Comparison
NZ_LR890568.1 See Comparison
NZ_LR890387.1 See Comparison
NZ_LR890499.1 See Comparison
NZ_LR890208.1 See Comparison
NZ_LR890394.1 See Comparison
NZ_CP089002.1 See Comparison
NZ_CP056198.1 See Comparison
NZ_CP056860.1 See Comparison
LR890535.1 See Comparison
LR890455.1 See Comparison
LR890244.1 See Comparison
NZ_CP142976.1 See Comparison
NZ_CP084817.1 See Comparison
CP024520.1 See Comparison
NZ_CP056380.1 See Comparison
CP056630.1 See Comparison
NZ_LR890348.1 See Comparison
NZ_CP070040.1 See Comparison
NZ_CP069877.1 See Comparison
NZ_CP070090.1 See Comparison
NZ_LR890489.1 See Comparison
NZ_LR890568.1 See Comparison
NZ_LR890387.1 See Comparison
NZ_LR890499.1 See Comparison
NZ_LR890190.1 See Comparison
NZ_CP056198.1 See Comparison
NZ_LR890208.1 See Comparison
NZ_LR890394.1 See Comparison
NZ_LR890234.1 See Comparison
LR890535.1 See Comparison
LR890455.1 See Comparison
LR890244.1 See Comparison
NZ_CP056860.1 See Comparison
NZ_CP089002.1 See Comparison
NZ_LR890489.1 See Comparison
NZ_CP084817.1 See Comparison
CP024520.1 See Comparison
NZ_CP142976.1 See Comparison
NZ_CP056380.1 See Comparison
CP056630.1 See Comparison
NZ_CP070040.1 See Comparison
NZ_CP069877.1 See Comparison
NZ_CP070090.1 See Comparison
NZ_LR890190.1 See Comparison
NZ_LR890348.1 See Comparison
NZ_LR890568.1 See Comparison
NZ_LR890387.1 See Comparison
NZ_LR890499.1 See Comparison
NZ_LR890208.1 See Comparison
NZ_LR890394.1 See Comparison
NZ_LR890234.1 See Comparison
LR890535.1 See Comparison
LR890455.1 See Comparison
LR890244.1 See Comparison
NZ_CP056198.1 See Comparison
NZ_CP056860.1 See Comparison
NZ_CP089002.1 See Comparison
NZ_CP084817.1 See Comparison
NZ_CP142976.1 See Comparison
CP024520.1 See Comparison
NZ_CP056380.1 See Comparison
NZ_CP070040.1 See Comparison
CP056630.1 See Comparison
NZ_CP069877.1 See Comparison
NZ_CP070090.1 See Comparison
LR890535.1 See Comparison
NZ_LR890348.1 See Comparison
NZ_LR890568.1 See Comparison
NZ_LR890387.1 See Comparison
NZ_LR890499.1 See Comparison
NZ_LR890489.1 See Comparison
NZ_LR890190.1 See Comparison
NZ_LR890208.1 See Comparison
NZ_LR890394.1 See Comparison
NZ_LR890234.1 See Comparison
LR890455.1 See Comparison
LR890244.1 See Comparison
NZ_CP056860.1 See Comparison
NZ_CP084817.1 See Comparison
NZ_CP056198.1 See Comparison
NZ_CP089002.1 See Comparison
NZ_CP142976.1 See Comparison
CP024520.1 See Comparison
NZ_CP056380.1 See Comparison
CP056630.1 See Comparison
LR890561.1 See Comparison
NZ_CP070040.1 See Comparison
NZ_CP069877.1 See Comparison
NZ_CP070090.1 See Comparison
NZ_LR890348.1 See Comparison
NZ_LR890568.1 See Comparison
NZ_LR890387.1 See Comparison
NZ_LR890499.1 See Comparison
NZ_LR890489.1 See Comparison
NZ_LR890190.1 See Comparison
NZ_LR890208.1 See Comparison
NZ_LR890394.1 See Comparison
NZ_LR890234.1 See Comparison
LR890535.1 See Comparison
LR890455.1 See Comparison
LR890244.1 See Comparison
NZ_CP056198.1 See Comparison
NZ_CP056860.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2