Plasmid NZ_LR890386.1

Sequence

Nucleotide Information

Accession NZ_LR890386.1
Description Klebsiella pneumoniae isolate INF333 plasmid 3, complete sequence
Source refseq
Topology circular
Length 3223 bp
GC Content 0.56 %
Created at NCBI Oct. 30, 2020



Assembly

Genome Data Information

Accession GCF_904864595.1
Assembly Coverage 89


Biosample

Curated Collection Information
Accession 6112228

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 37.8457S;144.9821E
Original Query Type coordinates
Coordinates (Lat/Lon) -37.85/144.98
Address Alfred Hospital, 55, Commercial Road, Melbourne, City of Melbourne, Victoria, 3004, Australia

ECOSYSTEM
Original Query Homo sapiens,sputum
Classification host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query pneumonia
DOID/SYMP
  • Pneumonia (DOID:552 )
    • A lung disease that involves lung parenchyma or alveolar inflammation and abnormal alveolar filling with fluid (consolidation and exudation). It results from a variety of causes including infection with bacteria, viruses, fungi or parasites, and chemical or physical injury to the lungs. It is accompanied by fever, chills, cough, and difficulty in breathing.

Visualization

PNG JSON

Plasmids from same Biosample



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OW968439.1 See Comparison
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OW849399.1 See Comparison
OW849152.1 See Comparison
OW849009.1 See Comparison
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NZ_CP077410.1 See Comparison
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NZ_CP011569.1 See Comparison
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NZ_CP011652.1 See Comparison
NZ_CP011604.1 See Comparison
NZ_CP003994.1 See Comparison
NZ_CP042544.1 See Comparison
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NZ_CP044112.1 See Comparison
NZ_CP037740.1 See Comparison
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NZ_CP011658.1 See Comparison
NZ_CP016867.1 See Comparison
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NZ_CP126797.1 See Comparison
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AP028570.1 See Comparison
AP028560.1 See Comparison
AP028554.1 See Comparison
AP028532.1 See Comparison
AP028528.1 See Comparison
AP028489.1 See Comparison
AP028471.1 See Comparison
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NZ_CP123434.1 See Comparison
NZ_CP145170.1 See Comparison
NZ_CP145194.1 See Comparison
NZ_CP145186.1 See Comparison
NZ_CP141851.1 See Comparison
NZ_AP028313.1 See Comparison
NZ_CP056227.1 See Comparison
NZ_KU302804.1 See Comparison
NZ_CP042539.1 See Comparison
NZ_CP048358.1 See Comparison
CP052342.1 See Comparison
CP052331.1 See Comparison
NZ_CP070585.1 See Comparison
NZ_CP029444.1 See Comparison
NZ_LR890420.1 See Comparison
CP068406.1 See Comparison
NZ_CP069901.1 See Comparison
NZ_CP069942.1 See Comparison
NZ_LR890575.1 See Comparison
NZ_LR890684.1 See Comparison
NZ_LR890197.1 See Comparison
NZ_LR890488.1 See Comparison
NZ_LR890725.1 See Comparison
NZ_LR890207.1 See Comparison
CP065862.1 See Comparison
NZ_LR890393.1 See Comparison
NZ_LR890233.1 See Comparison
NZ_LR890379.1 See Comparison
NZ_LR890347.1 See Comparison
NZ_LR890372.1 See Comparison
NZ_LR890567.1 See Comparison
NZ_LR890386.1 See Comparison
NZ_LR890496.1 See Comparison
NZ_LR890383.1 See Comparison
NZ_CP119556.1 See Comparison
NZ_CP065170.1 See Comparison
NZ_MT560069.1 See Comparison
LR890560.1 See Comparison
LR890534.1 See Comparison
LR890454.1 See Comparison
LR890243.1 See Comparison
NZ_CP063002.1 See Comparison
NZ_CP117175.1 See Comparison
NZ_CP114360.1 See Comparison
CP099711.1 See Comparison
NZ_CP104686.1 See Comparison
NZ_OX291473.1 See Comparison
NZ_OX291479.1 See Comparison
NZ_OX291589.1 See Comparison
NZ_OX291531.1 See Comparison
NZ_OX291708.1 See Comparison
NZ_OX291539.1 See Comparison
NZ_OX291749.1 See Comparison
NZ_OX291774.1 See Comparison
NZ_OX291799.1 See Comparison
OX291692.1 See Comparison
NZ_CP103725.1 See Comparison
OX291615.1 See Comparison
NZ_OX030734.1 See Comparison
NZ_CP071268.1 See Comparison
NZ_OW849113.1 See Comparison
NZ_OW849161.1 See Comparison
OW969605.1 See Comparison
NZ_OW849496.1 See Comparison
OW959935.1 See Comparison
OW969728.1 See Comparison
OW968439.1 See Comparison
OW968208.1 See Comparison
OW968264.1 See Comparison
OW849152.1 See Comparison
OW967373.1 See Comparison
OW849434.1 See Comparison
OW849425.1 See Comparison
OW849399.1 See Comparison
OW849106.1 See Comparison
OW849225.1 See Comparison
OW849081.1 See Comparison
CP094902.1 See Comparison
OW849009.1 See Comparison
OW848979.1 See Comparison
CP073306.1 See Comparison
CP093107.1 See Comparison
CP093101.1 See Comparison
CP091130.1 See Comparison
CP082593.1 See Comparison
CP082635.1 See Comparison
CP082745.1 See Comparison
CP082741.1 See Comparison
CP082443.1 See Comparison
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NZ_CP077410.1 See Comparison
NZ_CP073775.1 See Comparison
NZ_CP072957.1 See Comparison
NZ_CP072966.1 See Comparison
NZ_CP067317.1 See Comparison
NZ_CP018666.1 See Comparison
NZ_CP014305.2 See Comparison
NZ_CP011569.1 See Comparison
NZ_CP012991.1 See Comparison
NZ_CP011637.1 See Comparison
NZ_CP011652.1 See Comparison
NZ_CP011604.1 See Comparison
NZ_CP003994.1 See Comparison
NZ_CP042544.1 See Comparison
NZ_CP044040.1 See Comparison
NZ_CP042570.1 See Comparison
NZ_CP044112.1 See Comparison
NZ_CP038599.1 See Comparison
NZ_CP016867.1 See Comparison
NZ_CP037740.1 See Comparison
CP024519.1 See Comparison
NZ_CP011658.1 See Comparison
CP024514.1 See Comparison
CP024503.1 See Comparison
CP024487.1 See Comparison
NZ_CP126797.1 See Comparison
NZ_CP024494.1 See Comparison
NZ_CP135209.1 See Comparison
NZ_CP114991.1 See Comparison
AP028532.1 See Comparison
AP028573.1 See Comparison
AP028570.1 See Comparison
AP028560.1 See Comparison
AP028554.1 See Comparison
AP028528.1 See Comparison
AP028489.1 See Comparison
AP028471.1 See Comparison
NZ_OX461108.1 See Comparison
CP123668.1 See Comparison
CP123696.1 See Comparison
CP123709.1 See Comparison
NZ_AP028313.1 See Comparison
NZ_CP123434.1 See Comparison
NZ_CP145170.1 See Comparison
NZ_CP145194.1 See Comparison
NZ_CP145186.1 See Comparison
NZ_CP141851.1 See Comparison
NZ_CP056227.1 See Comparison
CP052342.1 See Comparison
NZ_KU302804.1 See Comparison
NZ_CP042539.1 See Comparison
NZ_CP048358.1 See Comparison
CP052331.1 See Comparison
CP068406.1 See Comparison
NZ_CP029444.1 See Comparison
NZ_CP069901.1 See Comparison
NZ_CP070585.1 See Comparison
NZ_CP069942.1 See Comparison
NZ_LR890379.1 See Comparison
NZ_LR890420.1 See Comparison
NZ_LR890488.1 See Comparison
NZ_LR890347.1 See Comparison
NZ_LR890372.1 See Comparison
NZ_LR890575.1 See Comparison
NZ_LR890567.1 See Comparison
NZ_LR890684.1 See Comparison
NZ_LR890496.1 See Comparison
NZ_LR890383.1 See Comparison
CP065862.1 See Comparison
NZ_LR890197.1 See Comparison
NZ_LR890725.1 See Comparison
NZ_LR890207.1 See Comparison
NZ_LR890393.1 See Comparison
NZ_LR890233.1 See Comparison
LR890560.1 See Comparison
NZ_CP065170.1 See Comparison
NZ_MT560069.1 See Comparison
LR890534.1 See Comparison
LR890454.1 See Comparison
LR890243.1 See Comparison
NZ_CP063002.1 See Comparison
NZ_CP119556.1 See Comparison
NZ_CP117175.1 See Comparison
NZ_CP114360.1 See Comparison
CP099711.1 See Comparison
NZ_OX291539.1 See Comparison
NZ_CP104686.1 See Comparison
NZ_OX291749.1 See Comparison
NZ_OX291774.1 See Comparison
NZ_OX291799.1 See Comparison
NZ_OW849496.1 See Comparison
NZ_OX291473.1 See Comparison
NZ_OX291479.1 See Comparison
NZ_OX291589.1 See Comparison
NZ_OX291531.1 See Comparison
NZ_OX291708.1 See Comparison
NZ_CP103725.1 See Comparison
OX291692.1 See Comparison
OX291615.1 See Comparison
NZ_OX030734.1 See Comparison
NZ_CP071268.1 See Comparison
NZ_OW849113.1 See Comparison
NZ_OW849161.1 See Comparison
OW968439.1 See Comparison
OW959935.1 See Comparison
OW969728.1 See Comparison
OW969605.1 See Comparison
OW968264.1 See Comparison
OW967373.1 See Comparison
OW968208.1 See Comparison
OW849434.1 See Comparison
OW849425.1 See Comparison
OW849225.1 See Comparison
OW849399.1 See Comparison
CP093107.1 See Comparison
OW849152.1 See Comparison
OW849106.1 See Comparison
OW849081.1 See Comparison
OW849009.1 See Comparison
OW848979.1 See Comparison
CP094902.1 See Comparison
CP093101.1 See Comparison
CP091130.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore