Plasmid NZ_CP141203.1

Sequence

Nucleotide Information

Accession NZ_CP141203.1
Description Escherichia coli strain WGS1363 plasmid unnamed3, complete sequence
Source refseq
Topology circular
Length 4064 bp
GC Content 0.50 %
Created at NCBI Jan. 30, 2024



Assembly

Genome Data Information

Accession GCF_024199045.2
Assembly Coverage 80


Biosample

Curated Collection Information
Accession 29499981

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 55.67N;12.57E
Original Query Type coordinates
Coordinates (Lat/Lon) 55.67/12.57
Address Mitchellsgade, Postbyen, Meatpacking District, Copenhagen, Copenhagen Municipality, Indre By, Capital Region of Denmark, 1568, Denmark

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Clinical infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP047552.1 See Comparison
NZ_CP090537.1 See Comparison
NZ_CP047534.1 See Comparison
NZ_CP135670.1 See Comparison
NZ_LT795116.1 See Comparison
NZ_CP135670.1 See Comparison
NZ_CP050752.1 See Comparison
NZ_CP050755.1 See Comparison
NZ_LT795116.1 See Comparison
NZ_CP054350.1 See Comparison
NZ_LR890696.1 See Comparison
NZ_CP090537.1 See Comparison
NZ_CP047552.1 See Comparison
NZ_CP047534.1 See Comparison
NZ_CP047552.1 See Comparison
NZ_CP050752.1 See Comparison
NZ_CP050755.1 See Comparison
NZ_CP054350.1 See Comparison
NZ_LR890696.1 See Comparison
NZ_CP047534.1 See Comparison
NZ_LR890696.1 See Comparison
NZ_CP135670.1 See Comparison
NZ_CP054350.1 See Comparison
NZ_CP050752.1 See Comparison
NZ_CP050755.1 See Comparison
NZ_CP090537.1 See Comparison
NZ_LT795116.1 See Comparison
NZ_CP050752.1 See Comparison
NZ_CP047552.1 See Comparison
NZ_CP047534.1 See Comparison
NZ_LT795116.1 See Comparison
NZ_CP090537.1 See Comparison
NZ_CP135670.1 See Comparison
NZ_CP141203.1 See Comparison
NZ_CP054350.1 See Comparison
NZ_CP050755.1 See Comparison
NZ_CP090537.1 See Comparison
NZ_LR890696.1 See Comparison
NZ_CP047552.1 See Comparison
NZ_CP047534.1 See Comparison
NZ_LT795116.1 See Comparison
NZ_CP135670.1 See Comparison
NZ_CP047552.1 See Comparison
NZ_CP054350.1 See Comparison
NZ_CP050752.1 See Comparison
NZ_CP050755.1 See Comparison
NZ_LR890696.1 See Comparison
NZ_CP090537.1 See Comparison
NZ_CP047534.1 See Comparison
NZ_CP050752.1 See Comparison
NZ_LT795116.1 See Comparison
NZ_CP135670.1 See Comparison
NZ_CP054350.1 See Comparison
NZ_CP050755.1 See Comparison
NZ_LR890696.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore