Plasmid NZ_CP047534.1
Sequence
Nucleotide Information
| Accession | NZ_CP047534.1 |
|---|---|
| Description | Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10484 plasmid unnamedC, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 4074 bp |
| GC Content | 0.50 % |
| Created at NCBI | Jan. 9, 2020 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Salmonella enterica (90371) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Salmonella (590) |
| Species | Salmonella_enterica (28901) |
| Strain |
Biosample
Curated Collection Information
| Accession | 9759462 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 31.23N;121.47E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 31.23/121.47 |
| Address | People's Square, 120, People's Avenue, Jiangyin, Nanjingdonglu Subdistrict, Shanghai, Huangpu District, Shanghai, 200001, China |
ECOSYSTEM
| Original Query | Clam |
|---|---|
| Classification | host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| oriT | NC_013327 | MOBQ | 732 | 909 | minus | 100 | 100 | 5.61e-88 | 329 |
| oriT | NC_009791 | MOBQ | 909 | 1268 | plus | 98.333 | 100 | 8.460000000000002e-179 | 632 |
| relaxase | NC_011411_00002 | MOBQ | 823 | 3066 | plus | 99.064 | 100 | 0 | 1502 |
| replicon | 001202__CP011432_00001 | rep_cluster_1778 | 3327 | 4019 | minus | 95.965 | 100 | 0 | 1125 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 4 of 4 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |