Plasmid NZ_CP122908.1

Sequence

Nucleotide Information

Accession NZ_CP122908.1
Description Escherichia coli strain ETEC1706 plasmid unnamed4, complete sequence
Source refseq
Topology circular
Length 4066 bp
GC Content 0.50 %
Created at NCBI May 17, 2023



Assembly

Genome Data Information

Accession GCF_030012725.1
Assembly Coverage 125


Biosample

Curated Collection Information
Accession 32549588

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Belgium
Original Query Type name
Coordinates (Lat/Lon) 50.64/4.67
Address Belgium

ECOSYSTEM
Original Query Sus scrofa,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query enteric colibacillosis
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP011140.1 See Comparison
CP125031.1 See Comparison
NZ_OY754833.1 See Comparison
NZ_CP062906.1 See Comparison
NZ_CP053242.1 See Comparison
NZ_CP062861.1 See Comparison
CP125031.1 See Comparison
NZ_CP074039.1 See Comparison
NZ_CP011140.1 See Comparison
NZ_CP117037.1 See Comparison
NZ_CP062906.1 See Comparison
NZ_OY754833.1 See Comparison
NZ_CP053242.1 See Comparison
NZ_CP062861.1 See Comparison
NZ_CP117037.1 See Comparison
NZ_OY754833.1 See Comparison
NZ_CP011140.1 See Comparison
CP125031.1 See Comparison
NZ_CP074039.1 See Comparison
NZ_OY754833.1 See Comparison
NZ_CP053242.1 See Comparison
NZ_CP062906.1 See Comparison
NZ_CP062861.1 See Comparison
NZ_CP117037.1 See Comparison
NZ_CP011140.1 See Comparison
NZ_CP074039.1 See Comparison
CP125031.1 See Comparison
NZ_CP053242.1 See Comparison
NZ_CP053242.1 See Comparison
NZ_CP062906.1 See Comparison
NZ_CP062861.1 See Comparison
NZ_CP117037.1 See Comparison
NZ_CP074039.1 See Comparison
NZ_CP011140.1 See Comparison
NZ_CP122908.1 See Comparison
CP125031.1 See Comparison
NZ_OY754833.1 See Comparison
NZ_CP074039.1 See Comparison
NZ_CP062906.1 See Comparison
NZ_CP062861.1 See Comparison
NZ_CP117037.1 See Comparison
NZ_CP053242.1 See Comparison
NZ_CP011140.1 See Comparison
CP125031.1 See Comparison
NZ_OY754833.1 See Comparison
NZ_CP062906.1 See Comparison
NZ_CP062861.1 See Comparison
NZ_CP117037.1 See Comparison
NZ_CP117037.1 See Comparison
NZ_CP074039.1 See Comparison
NZ_CP011140.1 See Comparison
CP125031.1 See Comparison
NZ_OY754833.1 See Comparison
NZ_CP053242.1 See Comparison
NZ_CP062906.1 See Comparison
NZ_CP062861.1 See Comparison
NZ_CP074039.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2