Plasmid NZ_CP122909.1

Sequence

Nucleotide Information

Accession	NZ_CP122909.1
Description	Escherichia coli strain ETEC1706 plasmid unnamed5, complete sequence
Source	refseq
Topology	circular
Length	93594 bp
GC Content	0.48 %
Created at NCBI	May 17, 2023

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_030012725.1
Assembly Coverage	125

Biosample

Curated Collection Information

Accession	32549588

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	Belgium
Original Query Type	name
Coordinates (Lat/Lon)	50.64/4.67
Address	Belgium

ECOSYSTEM

Original Query	Sus scrofa,feces
Classification	fecal,gastrointestinal_system,host_associated
Host-associated Taxon	Sus scrofa (9823)

DISEASE

Original Query	enteric colibacillosis
DOID/SYMP	Bacterial infectious disease (DOID:104 ) A disease by infectious agent that results_in infection, has_material_basis_in Bacteria. Has_material_basis_in: ['bacteria']

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP122909.1	See Comparison

Plasmid Visualization

Grays

Blues

Purples

Reds

Oranges

Greens

100

Hex

R

G

B

Search:

Source	Element Name	Display	Sequence	Favorite

PGAG	N-6 DNA methylase		copy
PGAG	hypothetical protein		copy
PGAG	hypothetical protein		copy
PGAG	SIR2 family protein		copy
PGAG	hypothetical protein		copy
PGAG	Ref family protein		copy
PGAG	hypothetical protein		copy
PGAG	site-specific integrase		copy
PGAG	hypothetical protein		copy
PGAG	hypothetical protein		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 95 entries

…

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Search:

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Loading...
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

Loading...
NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

replicon	000230__CP009168_00001	IncY	50111	50971	plus	98.955	100	0	1541
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 1 of 1 entry

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

Loading...
NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2