Plasmid NZ_CP062906.1
Sequence
Nucleotide Information
| Accession | NZ_CP062906.1 |
|---|---|
| Description | Escherichia coli strain Res13-Lact-EB12-05 plasmid unnamed471, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 4067 bp |
| GC Content | 0.50 % |
| Created at NCBI | Nov. 19, 2020 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Escherichia coli (562) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Escherichia (561) |
| Species | Escherichia_coli (562) |
| Strain |
Biosample
Curated Collection Information
| Accession | 16304132 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | Canada,Quebec |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 52.48/-71.83 |
| Address | Canada,Quebec |
ECOSYSTEM
| Original Query | Sus scrofa domesticus,feces |
|---|---|
| Classification | fecal,gastrointestinal_system,host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
| Loading... | |||||||
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | 001201__CP010878_00001 | rep_cluster_1778 | 1885 | 2592 | minus | 100 | 100 | 0 | 1308 |
| relaxase | NC_011411_00002 | MOBQ | 2 | 1633 | plus | 97.263 | 99 | 0 | 1061 |
| relaxase | NC_011411_00002 | MOBQ | 3469 | 4065 | plus | 97.99 | 99 | 4.08e-124 | 408 |
| oriT | NC_002126 | MOBQ | 3381 | 3555 | minus | 98.286 | 98 | 2.6299999999999998e-81 | 307 |
| oriT | NC_010672 | MOBQ | 3555 | 3914 | plus | 97.222 | 100 | 3.97e-172 | 610 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 5 of 5 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |