Plasmid NZ_CP122913.1

Sequence

Nucleotide Information

Accession NZ_CP122913.1
Description Escherichia coli strain ETEC1706 plasmid unnamed9, complete sequence
Source refseq
Topology circular
Length 4778 bp
GC Content 0.51 %
Created at NCBI May 17, 2023



Assembly

Genome Data Information

Accession GCF_030012725.1
Assembly Coverage 125


Biosample

Curated Collection Information

Accession 32549588

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Belgium
Original Query Type name
Coordinates (Lat/Lon) 50.64/4.67
Address Belgium

ECOSYSTEM
Original Query Sus scrofa,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query enteric colibacillosis
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
  • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization





Plasmid Visualization


SourceElement Name Display Sequence Favorite
PGAGMbeB family mobilization proteincopy
PGAGMbeD family mobilization/exclusion proteincopy
PGAGhypothetical proteincopy
PGAGParA family proteincopy
PGAGhypothetical proteincopy
MOB-typerMOBPcopy
MOB-typerrep_cluster_2335copy
MOB-typerMOBPcopy
MOB-typerMOBPcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 9 of 9 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTCP008720MOBP44914665plus94.8571002.61e-71274
repliconKU302809_00001rep_cluster_233539814568minus91.892970819
relaxaseNC_001848_00006MOBP1303plus93.137953.27e-57196
relaxaseNC_016979_00005MOBP3101815plus94.2231000906
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 4 of 4 entries