Plasmid NZ_CP122913.1
Sequence
Nucleotide Information
Accession | NZ_CP122913.1 |
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Description | Escherichia coli strain ETEC1706 plasmid unnamed9, complete sequence |
Source | refseq |
Topology | circular |
Length | 4778 bp |
GC Content | 0.51 % |
Created at NCBI | May 17, 2023 |
Host Taxonomy
According to NCBI Taxonomy
Assigned Host | Escherichia coli (562) |
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Lineage
Superkingdom | Bacteria (2) |
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Phylum | Pseudomonadota (1224) |
Class | Gammaproteobacteria (1236) |
Order | Enterobacterales (91347) |
Family | Enterobacteriaceae (543) |
Genus | Escherichia (561) |
Species | Escherichia_coli (562) |
Strain |
Biosample
Curated Collection Information
Accession | 32549588 |
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PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query | Belgium |
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Original Query Type | name |
Coordinates (Lat/Lon) | 50.64/4.67 |
Address | Belgium |
ECOSYSTEM
Original Query | Sus scrofa,feces |
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Classification | fecal,gastrointestinal_system,host_associated |
Host-associated Taxon |
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DISEASE
Original Query | enteric colibacillosis |
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DOID/SYMP |
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Visualization
Similar Plasmids
based on Mash distance
Plasmid Visualization
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Source | Element Name | Display | Sequence | Favorite |
---|---|---|---|---|
PGAG | MbeB family mobilization protein | copy | ||
PGAG | MbeD family mobilization/exclusion protein | copy | ||
PGAG | hypothetical protein | copy | ||
PGAG | ParA family protein | copy | ||
PGAG | hypothetical protein | copy | ||
MOB-typer | MOBP | copy | ||
MOB-typer | rep_cluster_2335 | copy | ||
MOB-typer | MOBP | copy | ||
MOB-typer | MOBP | copy | ||
Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 9 of 9 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
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NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
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NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
---|---|---|---|---|---|---|---|---|---|
oriT | CP008720 | MOBP | 4491 | 4665 | plus | 94.857 | 100 | 2.61e-71 | 274 |
replicon | KU302809_00001 | rep_cluster_2335 | 3981 | 4568 | minus | 91.892 | 97 | 0 | 819 |
relaxase | NC_001848_00006 | MOBP | 1 | 303 | plus | 93.137 | 95 | 3.27e-57 | 196 |
relaxase | NC_016979_00005 | MOBP | 310 | 1815 | plus | 94.223 | 100 | 0 | 906 |
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 4 of 4 entries