Plasmid NZ_CP121219.1

Sequence

Nucleotide Information

Accession NZ_CP121219.1
Description Shigella flexneri 2a strain Sflex 21-42 plasmid unnamed2, complete sequence
Source refseq
Topology circular
Length 3179 bp
GC Content 0.45 %
Created at NCBI June 29, 2023



Assembly

Genome Data Information

Accession GCF_029625495.1
Assembly Coverage 70


Biosample

Curated Collection Information

Accession 33861938

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 49.28N;123.12W
Original Query Type coordinates
Coordinates (Lat/Lon) 49.28/-123.12
Address Daily Body Care, 872, Seymour Street, Yaletown, Downtown, Vancouver, Metro Vancouver Regional District, British Columbia, V6B, Canada

ECOSYSTEM
Original Query Homo sapiens,fecal sample
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Shigellosis
DOID/SYMP
  • Shigellosis (DOID:12385 )
  • A primary bacterial infectious disease that results_in infection located_in epithelium of colon, has_material_basis_in Shigella boydii, has_material_basis_in Shigella dysenteriae, has_material_basis_in Shigella flexneri, or has_material_basis_in Shigella sonnei, which produce toxins that can attack the lining of the large intestine, causing swelling, ulcers on the intestinal wall, and bloody diarrhea. The bacteria are transmitted_by ingestion of food and water contaminated with feces.
    • Has_material_basis_in: ['shigella boydii', 'shigella dysenteriae', 'shigella flexneri', 'shigella sonnei']

Visualization




Similar Plasmids

based on Mash distance

NZ_MW133278.1 See Comparison
NZ_MW133279.1 See Comparison
NZ_CP085206.1 See Comparison
NZ_CP094990.1 See Comparison
NZ_CP042978.1 See Comparison
NC_002773.1 See Comparison
CP100047.1 See Comparison
NZ_CP138851.1 See Comparison
NZ_CP058592.1 See Comparison
NZ_CP054915.1 See Comparison
NZ_CP152077.1 See Comparison
NZ_CP106860.1 See Comparison
NZ_CP151327.1 See Comparison
NZ_CP151333.1 See Comparison
NZ_CP151348.1 See Comparison
NZ_CP138851.1 See Comparison
NZ_CP085206.1 See Comparison
NC_002773.1 See Comparison
NZ_MW133278.1 See Comparison
NZ_MW133279.1 See Comparison
NZ_CP094990.1 See Comparison
NZ_CP042978.1 See Comparison
CP100047.1 See Comparison
NZ_MW133278.1 See Comparison
NZ_CP058592.1 See Comparison
NZ_CP121219.1 See Comparison
NZ_CP106860.1 See Comparison
NZ_CP152077.1 See Comparison
NZ_CP151327.1 See Comparison
NZ_CP151333.1 See Comparison
NZ_CP151348.1 See Comparison
NZ_CP054915.1 See Comparison
NZ_MW133279.1 See Comparison
NZ_CP085206.1 See Comparison
NZ_CP094990.1 See Comparison
NZ_CP042978.1 See Comparison
NZ_CP058592.1 See Comparison
NC_002773.1 See Comparison
NZ_CP138851.1 See Comparison
CP100047.1 See Comparison
NZ_CP094990.1 See Comparison
NZ_CP152077.1 See Comparison
NZ_CP151327.1 See Comparison
NZ_CP151333.1 See Comparison
NZ_CP151348.1 See Comparison
NZ_CP106860.1 See Comparison
NZ_CP054915.1 See Comparison
NZ_MW133278.1 See Comparison
NZ_MW133279.1 See Comparison
NZ_CP085206.1 See Comparison
NC_002773.1 See Comparison
NZ_CP042978.1 See Comparison
NZ_CP106860.1 See Comparison
NZ_CP138851.1 See Comparison
CP100047.1 See Comparison
NZ_CP058592.1 See Comparison
NZ_CP054915.1 See Comparison
NZ_CP152077.1 See Comparison
NZ_CP151327.1 See Comparison
NZ_CP151333.1 See Comparison
NZ_CP151348.1 See Comparison
NC_002773.1 See Comparison
NZ_MW133278.1 See Comparison
NZ_MW133279.1 See Comparison
NZ_CP085206.1 See Comparison
NZ_CP094990.1 See Comparison
NZ_CP042978.1 See Comparison
CP100047.1 See Comparison
NZ_CP138851.1 See Comparison
NZ_CP106860.1 See Comparison
NZ_CP058592.1 See Comparison
NZ_CP054915.1 See Comparison
NZ_CP152077.1 See Comparison
NZ_CP151327.1 See Comparison
NZ_CP151333.1 See Comparison
NZ_CP151348.1 See Comparison
NZ_MW133278.1 See Comparison
NZ_MW133279.1 See Comparison
NZ_CP085206.1 See Comparison
NZ_CP094990.1 See Comparison
NZ_CP042978.1 See Comparison
NC_002773.1 See Comparison
CP100047.1 See Comparison
NZ_CP138851.1 See Comparison
NZ_CP106860.1 See Comparison
NZ_CP058592.1 See Comparison
NZ_CP054915.1 See Comparison
NZ_CP152077.1 See Comparison
NZ_CP151327.1 See Comparison
NZ_CP151333.1 See Comparison
NZ_CP151348.1 See Comparison


Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore