Plasmid NC_002773.1

Sequence

Nucleotide Information

Accession	NC_002773.1
Description	Shigella flexneri 2a plasmid p2457TS2, complete sequence
Source	refseq
Topology	circular
Length	3179 bp
GC Content	0.45 %
Created at NCBI	May 8, 2001

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Shigella flexneri (42897)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Shigella (620)
Species	Shigella_flexneri (623)
Strain

Biosample

Curated Collection Information

Accession	14224792

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	None
Original Query Type	None
Coordinates (Lat/Lon)
Address	None

ECOSYSTEM

Original Query	None
Classification	None
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Visualization

Similar Plasmids

based on Mash distance

NZ_MW133278.1	See Comparison
NZ_MW133279.1	See Comparison
NZ_CP085206.1	See Comparison
NZ_CP094990.1	See Comparison
NZ_CP042978.1	See Comparison
NC_002773.1	See Comparison
NZ_CP138851.1	See Comparison
NZ_CP121219.1	See Comparison
CP100047.1	See Comparison
NZ_CP106860.1	See Comparison
NZ_CP058592.1	See Comparison
NZ_CP054915.1	See Comparison
NZ_CP152077.1	See Comparison
NZ_CP151327.1	See Comparison
NZ_CP151333.1	See Comparison
NZ_CP151348.1	See Comparison
NZ_CP138851.1	See Comparison
NZ_CP042978.1	See Comparison
NZ_MW133278.1	See Comparison
NZ_MW133279.1	See Comparison
NZ_CP085206.1	See Comparison
NZ_CP094990.1	See Comparison
NZ_CP121219.1	See Comparison
CP100047.1	See Comparison
NZ_CP106860.1	See Comparison
NZ_CP058592.1	See Comparison
NZ_CP152077.1	See Comparison
NZ_CP151327.1	See Comparison
NZ_CP151333.1	See Comparison
NZ_CP151348.1	See Comparison
NZ_MW133278.1	See Comparison
NZ_CP054915.1	See Comparison
NZ_MW133279.1	See Comparison
NZ_CP106860.1	See Comparison
NZ_CP085206.1	See Comparison
NZ_CP094990.1	See Comparison
CP100047.1	See Comparison
NZ_CP058592.1	See Comparison
NZ_CP042978.1	See Comparison
NZ_CP138851.1	See Comparison
NZ_MW133278.1	See Comparison
NZ_CP121219.1	See Comparison
NZ_CP152077.1	See Comparison
NZ_CP151327.1	See Comparison
NZ_CP151333.1	See Comparison
NZ_CP151348.1	See Comparison
NZ_CP054915.1	See Comparison
NZ_MW133279.1	See Comparison
NZ_CP094990.1	See Comparison
NZ_CP085206.1	See Comparison
NZ_CP042978.1	See Comparison
NZ_CP152077.1	See Comparison
CP100047.1	See Comparison
NZ_CP106860.1	See Comparison
NZ_CP138851.1	See Comparison
NZ_CP058592.1	See Comparison
NZ_CP121219.1	See Comparison
NZ_CP151327.1	See Comparison
NZ_CP151333.1	See Comparison
NZ_CP151348.1	See Comparison
NZ_CP054915.1	See Comparison
NZ_MW133278.1	See Comparison
NZ_MW133279.1	See Comparison
NZ_CP042978.1	See Comparison
NZ_CP085206.1	See Comparison
NZ_CP094990.1	See Comparison
NZ_CP138851.1	See Comparison
CP100047.1	See Comparison
NZ_CP121219.1	See Comparison
NZ_CP106860.1	See Comparison
NZ_CP058592.1	See Comparison
NZ_CP152077.1	See Comparison
NZ_CP151333.1	See Comparison
NZ_CP151348.1	See Comparison
NZ_CP054915.1	See Comparison
NZ_CP151327.1	See Comparison
NZ_CP094990.1	See Comparison
NZ_CP085206.1	See Comparison
NZ_MW133278.1	See Comparison
NZ_MW133279.1	See Comparison
NZ_CP138851.1	See Comparison
NZ_CP042978.1	See Comparison
NZ_CP121219.1	See Comparison
CP100047.1	See Comparison
NZ_CP058592.1	See Comparison
NZ_CP106860.1	See Comparison
NZ_CP152077.1	See Comparison
NZ_CP151348.1	See Comparison
NZ_CP085206.1	See Comparison
NZ_CP151327.1	See Comparison
NZ_CP151333.1	See Comparison
NZ_CP054915.1	See Comparison
NZ_MW133278.1	See Comparison
NZ_MW133279.1	See Comparison
NZ_CP042978.1	See Comparison
NZ_CP094990.1	See Comparison
NZ_CP058592.1	See Comparison
NZ_CP138851.1	See Comparison
CP100047.1	See Comparison
NZ_CP121219.1	See Comparison
NZ_CP106860.1	See Comparison
NZ_CP152077.1	See Comparison
NZ_CP151327.1	See Comparison
NZ_CP151333.1	See Comparison
NZ_CP151348.1	See Comparison
NZ_CP054915.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Detected typing markers by plasmidfinder

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2
NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2