Plasmid NZ_CP094990.1

Sequence

Nucleotide Information

Accession NZ_CP094990.1
Description Shigella flexneri strain 3160_NCHU22 plasmid pS3160_3, complete sequence
Source refseq
Topology circular
Length 3182 bp
GC Content 0.45 %
Created at NCBI April 14, 2022



Assembly

Genome Data Information

Accession GCF_022869845.1
Assembly Coverage 147


Biosample

Curated Collection Information

Accession 27117281

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 23.87481812N;121.08515853E
Original Query Type coordinates
Coordinates (Lat/Lon) 23.87/121.09
Address 武界林道, Fazhi Village, Renai Township, Nantou County, Taiwan

ECOSYSTEM
Original Query Homo sapiens,stool
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query shigellosis
DOID/SYMP
  • Shigellosis (DOID:12385 )
  • A primary bacterial infectious disease that results_in infection located_in epithelium of colon, has_material_basis_in Shigella boydii, has_material_basis_in Shigella dysenteriae, has_material_basis_in Shigella flexneri, or has_material_basis_in Shigella sonnei, which produce toxins that can attack the lining of the large intestine, causing swelling, ulcers on the intestinal wall, and bloody diarrhea. The bacteria are transmitted_by ingestion of food and water contaminated with feces.
    • Has_material_basis_in: ['shigella boydii', 'shigella dysenteriae', 'shigella flexneri', 'shigella sonnei']

Visualization


Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_MW133278.1 See Comparison
NZ_MW133279.1 See Comparison
NZ_CP085206.1 See Comparison
NZ_CP094990.1 See Comparison
NC_002773.1 See Comparison
CP100047.1 See Comparison
NZ_CP138851.1 See Comparison
NZ_CP106860.1 See Comparison
NZ_CP054915.1 See Comparison
NZ_CP152077.1 See Comparison
NZ_CP151327.1 See Comparison
NZ_CP151333.1 See Comparison
NZ_CP058592.1 See Comparison
NZ_CP121219.1 See Comparison
NZ_CP151348.1 See Comparison
NC_002773.1 See Comparison
NZ_MW133278.1 See Comparison
NZ_MW133279.1 See Comparison
NZ_CP085206.1 See Comparison
NZ_CP106860.1 See Comparison
NZ_CP058592.1 See Comparison
NZ_CP138851.1 See Comparison
CP100047.1 See Comparison
NZ_CP054915.1 See Comparison
NZ_CP152077.1 See Comparison
NZ_CP151327.1 See Comparison
NZ_CP151333.1 See Comparison
NZ_CP151348.1 See Comparison
NZ_CP121219.1 See Comparison
NZ_MW133278.1 See Comparison
NZ_MW133279.1 See Comparison
NC_002773.1 See Comparison
NZ_CP085206.1 See Comparison
NZ_CP106860.1 See Comparison
NZ_CP138851.1 See Comparison
CP100047.1 See Comparison
NZ_CP058592.1 See Comparison
NZ_CP138851.1 See Comparison
NZ_CP121219.1 See Comparison
NZ_MW133278.1 See Comparison
NZ_MW133279.1 See Comparison
NZ_CP152077.1 See Comparison
NZ_CP151327.1 See Comparison
NZ_CP151333.1 See Comparison
NZ_CP151348.1 See Comparison
NZ_CP054915.1 See Comparison
NZ_CP085206.1 See Comparison
NC_002773.1 See Comparison
CP100047.1 See Comparison
NZ_MW133278.1 See Comparison
NZ_CP058592.1 See Comparison
NZ_CP152077.1 See Comparison
NZ_CP151327.1 See Comparison
NZ_CP151333.1 See Comparison
NZ_CP151348.1 See Comparison
NZ_CP106860.1 See Comparison
NZ_CP121219.1 See Comparison
NZ_CP054915.1 See Comparison
NZ_MW133279.1 See Comparison
NZ_CP085206.1 See Comparison
NZ_CP058592.1 See Comparison
NZ_CP138851.1 See Comparison
CP100047.1 See Comparison
NC_002773.1 See Comparison
NZ_CP152077.1 See Comparison
NZ_CP106860.1 See Comparison
NZ_CP121219.1 See Comparison
NZ_CP151327.1 See Comparison
NZ_CP151333.1 See Comparison
NZ_CP151348.1 See Comparison
NZ_CP138851.1 See Comparison
NZ_CP054915.1 See Comparison
NZ_CP085206.1 See Comparison
NZ_MW133278.1 See Comparison
NZ_MW133279.1 See Comparison
NC_002773.1 See Comparison
CP100047.1 See Comparison
NZ_CP106860.1 See Comparison
NZ_CP058592.1 See Comparison
NZ_CP054915.1 See Comparison
NZ_CP121219.1 See Comparison
NZ_CP152077.1 See Comparison
NZ_CP151327.1 See Comparison
NZ_CP151333.1 See Comparison
NZ_CP151348.1 See Comparison


Identical Plasmids

100% Sequence Identity



Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore