Plasmid NZ_CP085206.1

Sequence

Nucleotide Information

Accession NZ_CP085206.1
Description Shigella flexneri strain P099 plasmid p004
Source refseq
Topology linear
Length 3179 bp
GC Content 0.45 %
Created at NCBI May 3, 2022



Assembly

Genome Data Information

Accession GCF_023204675.1
Assembly Coverage 167


Biosample

Curated Collection Information
Accession 16710603

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA
Original Query Type name
Coordinates (Lat/Lon) 39.78/-100.45
Address USA

ECOSYSTEM
Original Query Macaca mulatta,Oral swab,Oral swab
Classification host_associated,oral
Host-associated Taxon
  • Macaca mulatta (9544)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_MW133278.1 See Comparison
NZ_MW133279.1 See Comparison
NZ_CP094990.1 See Comparison
NZ_CP042978.1 See Comparison
NC_002773.1 See Comparison
CP100047.1 See Comparison
NZ_CP138851.1 See Comparison
NZ_CP106860.1 See Comparison
NZ_CP058592.1 See Comparison
NZ_MW133278.1 See Comparison
NZ_CP121219.1 See Comparison
NZ_CP152077.1 See Comparison
NZ_CP151327.1 See Comparison
NZ_CP151333.1 See Comparison
NZ_CP151348.1 See Comparison
NZ_CP054915.1 See Comparison
NZ_MW133279.1 See Comparison
NC_002773.1 See Comparison
NZ_CP094990.1 See Comparison
NZ_CP042978.1 See Comparison
CP100047.1 See Comparison
NZ_CP138851.1 See Comparison
NZ_CP121219.1 See Comparison
NZ_CP106860.1 See Comparison
NZ_CP058592.1 See Comparison
NZ_CP152077.1 See Comparison
NZ_CP151333.1 See Comparison
NZ_CP151348.1 See Comparison
NZ_MW133278.1 See Comparison
NZ_CP151327.1 See Comparison
NZ_CP054915.1 See Comparison
NZ_MW133279.1 See Comparison
NZ_CP094990.1 See Comparison
NC_002773.1 See Comparison
NZ_CP042978.1 See Comparison
NZ_CP054915.1 See Comparison
NZ_CP106860.1 See Comparison
NZ_CP152077.1 See Comparison
NZ_CP151327.1 See Comparison
NZ_CP151333.1 See Comparison
NZ_CP151348.1 See Comparison
NZ_CP138851.1 See Comparison
CP100047.1 See Comparison
NZ_CP058592.1 See Comparison
NZ_CP121219.1 See Comparison
NZ_CP138851.1 See Comparison
NZ_CP085206.1 See Comparison
NZ_CP042978.1 See Comparison
NZ_MW133278.1 See Comparison
NZ_MW133279.1 See Comparison
NZ_CP094990.1 See Comparison
NC_002773.1 See Comparison
CP100047.1 See Comparison
NZ_CP121219.1 See Comparison
NZ_CP058592.1 See Comparison
NZ_CP106860.1 See Comparison
NZ_CP152077.1 See Comparison
NZ_CP151327.1 See Comparison
NZ_CP151333.1 See Comparison
NZ_CP151348.1 See Comparison
NZ_CP121219.1 See Comparison
NZ_CP054915.1 See Comparison
NZ_MW133278.1 See Comparison
NZ_MW133279.1 See Comparison
NZ_CP094990.1 See Comparison
NZ_CP042978.1 See Comparison
NZ_CP138851.1 See Comparison
CP100047.1 See Comparison
NZ_CP106860.1 See Comparison
NC_002773.1 See Comparison
NZ_CP058592.1 See Comparison
NZ_CP152077.1 See Comparison
NZ_CP151327.1 See Comparison
NZ_CP151333.1 See Comparison
NZ_CP151348.1 See Comparison
NZ_CP094990.1 See Comparison
NZ_CP054915.1 See Comparison
NZ_MW133278.1 See Comparison
NZ_MW133279.1 See Comparison
NZ_CP042978.1 See Comparison
NZ_CP058592.1 See Comparison
NC_002773.1 See Comparison
CP100047.1 See Comparison
NZ_CP138851.1 See Comparison
NZ_CP152077.1 See Comparison
NZ_CP106860.1 See Comparison
NZ_CP121219.1 See Comparison
NZ_CP151327.1 See Comparison
NZ_CP151348.1 See Comparison
NZ_CP151333.1 See Comparison
NZ_CP054915.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore