Plasmid NZ_CP119981.1

Sequence

Nucleotide Information

Accession NZ_CP119981.1
Description Salmonella enterica strain CRIN525628 plasmid p525628, complete sequence
Source refseq
Topology circular
Length 294021 bp
GC Content 0.50 %
Created at NCBI April 13, 2023



Assembly

Genome Data Information

Accession GCF_029692005.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 33715203

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Costa Rica
Original Query Type name
Coordinates (Lat/Lon) 10.27/-84.07
Address Costa Rica

ECOSYSTEM
Original Query Homo sapiens,human feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Salmonella gastroenteritis
DOID/SYMP
  • Salmonellosis (DOID:0060859 )
    • A primary bacterial infectious disease caused by the bacteria of the genus Salmonella. It has symptoms diarrhea, fever, vomiting, and abdominal cramps 12 to 72 hours after infection. In most cases, the illness lasts four to seven days, and most people recover without treatment.

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP148819.1 See Comparison
NZ_CP148795.1 See Comparison
CP052834.1 See Comparison
CP052830.1 See Comparison
CP052822.1 See Comparison
CP052814.1 See Comparison
CP052812.1 See Comparison
CP052808.1 See Comparison
CP052799.1 See Comparison
CP052804.1 See Comparison
CP052793.1 See Comparison
CP052791.1 See Comparison
CP066336.1 See Comparison
NZ_CP119987.1 See Comparison
NZ_CP119983.1 See Comparison
CP052834.1 See Comparison
CP082522.1 See Comparison
CP082618.1 See Comparison
NZ_CP148819.1 See Comparison
NZ_CP148795.1 See Comparison
CP052830.1 See Comparison
CP052822.1 See Comparison
CP052814.1 See Comparison
CP052812.1 See Comparison
CP052808.1 See Comparison
CP052799.1 See Comparison
CP052804.1 See Comparison
CP052793.1 See Comparison
CP052791.1 See Comparison
CP082522.1 See Comparison
CP066336.1 See Comparison
NZ_CP119987.1 See Comparison
NZ_CP119983.1 See Comparison
CP082618.1 See Comparison
CP052834.1 See Comparison
NZ_CP148819.1 See Comparison
NZ_CP148795.1 See Comparison
CP052830.1 See Comparison
CP052822.1 See Comparison
CP052814.1 See Comparison
CP052812.1 See Comparison
CP052808.1 See Comparison
CP052799.1 See Comparison
CP052804.1 See Comparison
CP052793.1 See Comparison
CP052791.1 See Comparison
CP052834.1 See Comparison
CP066336.1 See Comparison
NZ_CP119987.1 See Comparison
NZ_CP119983.1 See Comparison
CP082522.1 See Comparison
CP082618.1 See Comparison
NZ_CP148795.1 See Comparison
NZ_CP148819.1 See Comparison
CP052830.1 See Comparison
CP052822.1 See Comparison
CP052814.1 See Comparison
CP052812.1 See Comparison
CP052808.1 See Comparison
CP052799.1 See Comparison
CP052804.1 See Comparison
CP052793.1 See Comparison
CP052791.1 See Comparison
CP052834.1 See Comparison
CP082522.1 See Comparison
CP082618.1 See Comparison
NZ_CP148819.1 See Comparison
CP066336.1 See Comparison
NZ_CP119987.1 See Comparison
NZ_CP119983.1 See Comparison
NZ_CP148795.1 See Comparison
CP052830.1 See Comparison
CP052822.1 See Comparison
CP052814.1 See Comparison
CP052812.1 See Comparison
CP052808.1 See Comparison
CP052799.1 See Comparison
CP052804.1 See Comparison
CP052793.1 See Comparison
CP052791.1 See Comparison
CP066336.1 See Comparison
CP082522.1 See Comparison
CP082618.1 See Comparison
NZ_CP148819.1 See Comparison
NZ_CP148795.1 See Comparison
CP052834.1 See Comparison
CP052830.1 See Comparison
CP052822.1 See Comparison
CP052814.1 See Comparison
CP052812.1 See Comparison
CP052808.1 See Comparison
CP052799.1 See Comparison
CP052804.1 See Comparison
CP052793.1 See Comparison
CP052791.1 See Comparison
CP066336.1 See Comparison
NZ_CP119987.1 See Comparison
NZ_CP119983.1 See Comparison
NZ_CP119987.1 See Comparison
NZ_CP119981.1 See Comparison
NZ_CP119983.1 See Comparison
CP082522.1 See Comparison
CP082618.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore