Plasmid CP052822.1

Sequence

Nucleotide Information

Accession CP052822.1
Description Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1349 plasmid pN17S1349, complete sequence
Source insd
Topology circular
Length 298238 bp
GC Content 0.50 %
Created at NCBI May 19, 2020



Assembly

Genome Data Information

Accession GCF_005447485.1
Assembly Coverage 417


Biosample

Curated Collection Information
Accession 10133037

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,MD
Original Query Type name
Coordinates (Lat/Lon) 39.52/-76.94
Address USA,MD

ECOSYSTEM
Original Query Chicken Wings
Classification food,meat
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

CP082522.1 See Comparison
NZ_CP016413.1 See Comparison
NZ_CP133182.1 See Comparison
NZ_CP148798.1 See Comparison
NZ_CP148819.1 See Comparison
NZ_CP148827.1 See Comparison
NZ_CP148823.1 See Comparison
NZ_CP148829.1 See Comparison
NZ_CP148795.1 See Comparison
CP082522.1 See Comparison
CP052834.1 See Comparison
CP052830.1 See Comparison
CP052814.1 See Comparison
CP052808.1 See Comparison
CP052799.1 See Comparison
NZ_CP133182.1 See Comparison
NZ_CP148798.1 See Comparison
NZ_CP148819.1 See Comparison
CP052834.1 See Comparison
CP052830.1 See Comparison
CP052814.1 See Comparison
CP052808.1 See Comparison
CP052799.1 See Comparison
CP066336.1 See Comparison
CP066336.1 See Comparison
NZ_CP119987.1 See Comparison
NZ_CP119985.1 See Comparison
NZ_CP119981.1 See Comparison
NZ_CP119983.1 See Comparison
CP082522.1 See Comparison
NZ_CP016413.1 See Comparison
NZ_CP148827.1 See Comparison
NZ_CP148823.1 See Comparison
NZ_CP148829.1 See Comparison
NZ_CP148795.1 See Comparison
NZ_CP119987.1 See Comparison
NZ_CP119985.1 See Comparison
NZ_CP119981.1 See Comparison
NZ_CP119983.1 See Comparison
NZ_CP016413.1 See Comparison
NZ_CP148798.1 See Comparison
NZ_CP133182.1 See Comparison
NZ_CP148827.1 See Comparison
NZ_CP148823.1 See Comparison
NZ_CP148829.1 See Comparison
NZ_CP148795.1 See Comparison
NZ_CP148819.1 See Comparison
CP052834.1 See Comparison
CP052830.1 See Comparison
CP052814.1 See Comparison
CP052808.1 See Comparison
CP052799.1 See Comparison
NZ_CP119987.1 See Comparison
CP066336.1 See Comparison
NZ_CP119985.1 See Comparison
NZ_CP119981.1 See Comparison
NZ_CP119983.1 See Comparison
CP082522.1 See Comparison
CP052834.1 See Comparison
NZ_CP016413.1 See Comparison
NZ_CP133182.1 See Comparison
NZ_CP148798.1 See Comparison
NZ_CP148819.1 See Comparison
NZ_CP148827.1 See Comparison
NZ_CP148823.1 See Comparison
NZ_CP148829.1 See Comparison
NZ_CP148795.1 See Comparison
CP052834.1 See Comparison
CP052830.1 See Comparison
CP052822.1 See Comparison
CP052814.1 See Comparison
CP052808.1 See Comparison
CP052799.1 See Comparison
CP066336.1 See Comparison
CP082522.1 See Comparison
NZ_CP016413.1 See Comparison
NZ_CP133182.1 See Comparison
NZ_CP119987.1 See Comparison
NZ_CP119985.1 See Comparison
NZ_CP119981.1 See Comparison
NZ_CP119983.1 See Comparison
NZ_CP148798.1 See Comparison
NZ_CP148819.1 See Comparison
NZ_CP148827.1 See Comparison
NZ_CP148823.1 See Comparison
NZ_CP148829.1 See Comparison
NZ_CP148795.1 See Comparison
CP052830.1 See Comparison
CP052814.1 See Comparison
CP052808.1 See Comparison
CP052799.1 See Comparison
CP052834.1 See Comparison
CP082522.1 See Comparison
NZ_CP133182.1 See Comparison
CP066336.1 See Comparison
NZ_CP119987.1 See Comparison
NZ_CP119985.1 See Comparison
NZ_CP119981.1 See Comparison
NZ_CP119983.1 See Comparison
NZ_CP016413.1 See Comparison
NZ_CP148798.1 See Comparison
NZ_CP148819.1 See Comparison
NZ_CP148827.1 See Comparison
NZ_CP148823.1 See Comparison
NZ_CP148829.1 See Comparison
NZ_CP148795.1 See Comparison
CP052830.1 See Comparison
CP052814.1 See Comparison
CP052808.1 See Comparison
CP052799.1 See Comparison
CP066336.1 See Comparison
NZ_CP119987.1 See Comparison
NZ_CP119985.1 See Comparison
NZ_CP119981.1 See Comparison
NZ_CP119983.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore