Plasmid CP052804.1

Sequence

Nucleotide Information

Accession	CP052804.1
Description	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S973 plasmid pN17S0973, complete sequence
Source	insd
Topology	circular
Length	309326 bp
GC Content	0.50 %
Created at NCBI	May 19, 2020

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Salmonella enterica (595)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Salmonella (590)
Species	Salmonella_enterica (28901)
Strain

Biosample

Curated Collection Information

Accession	10132969

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	USA,MD
Original Query Type	name
Coordinates (Lat/Lon)	39.52/-76.94
Address	USA,MD

ECOSYSTEM

Original Query	Chicken Legs
Classification	food,meat
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Visualization

Similar Plasmids

based on Mash distance

CP092302.1	See Comparison
CP092295.1	See Comparison
CP082618.1	See Comparison
CP082539.1	See Comparison
CP074344.1	See Comparison
CP074342.1	See Comparison
NZ_CP016409.1	See Comparison
NZ_CP016407.1	See Comparison
NZ_CP016413.1	See Comparison
CP038508.1	See Comparison
NZ_CP133182.1	See Comparison
NZ_CP148819.1	See Comparison
NZ_CP148827.1	See Comparison
NZ_CP148823.1	See Comparison
NZ_CP148829.1	See Comparison
CP052840.1	See Comparison
NZ_CP039444.1	See Comparison
NZ_CP039446.1	See Comparison
NZ_CP039442.1	See Comparison
CP052838.1	See Comparison
CP052836.1	See Comparison
CP052830.1	See Comparison
CP052828.1	See Comparison
CP052814.1	See Comparison
CP052812.1	See Comparison
CP052795.1	See Comparison
CP052802.1	See Comparison
CP052788.1	See Comparison
CP052786.1	See Comparison
CP052779.1	See Comparison
CP070303.1	See Comparison
CP066336.1	See Comparison
NZ_OW849859.1	See Comparison
NZ_CP119981.1	See Comparison
CP074344.1	See Comparison
CP092302.1	See Comparison
CP092295.1	See Comparison
CP082618.1	See Comparison
CP082539.1	See Comparison
NZ_CP099762.1	See Comparison
CP074342.1	See Comparison
NZ_CP148819.1	See Comparison
CP038508.1	See Comparison
NZ_CP016409.1	See Comparison
NZ_CP016407.1	See Comparison
NZ_CP016413.1	See Comparison
NZ_CP133182.1	See Comparison
NZ_CP148827.1	See Comparison
NZ_CP148823.1	See Comparison
NZ_CP148829.1	See Comparison
NZ_CP039444.1	See Comparison
NZ_CP039446.1	See Comparison
NZ_CP039442.1	See Comparison
CP070303.1	See Comparison
CP052840.1	See Comparison
CP052838.1	See Comparison
CP052836.1	See Comparison
CP052830.1	See Comparison
CP052828.1	See Comparison
CP052814.1	See Comparison
CP052812.1	See Comparison
CP052795.1	See Comparison
CP052802.1	See Comparison
CP052788.1	See Comparison
CP052786.1	See Comparison
CP052779.1	See Comparison
NZ_CP099762.1	See Comparison
NZ_CP119981.1	See Comparison
NZ_OW849859.1	See Comparison
CP066336.1	See Comparison
CP092302.1	See Comparison
CP092295.1	See Comparison
CP074344.1	See Comparison
CP082618.1	See Comparison
CP082539.1	See Comparison
CP074342.1	See Comparison
NZ_CP016409.1	See Comparison
NZ_CP016407.1	See Comparison
NZ_CP016413.1	See Comparison
CP038508.1	See Comparison
NZ_CP148819.1	See Comparison
NZ_CP133182.1	See Comparison
NZ_CP148827.1	See Comparison
NZ_CP148823.1	See Comparison
NZ_CP148829.1	See Comparison
NZ_CP039444.1	See Comparison
NZ_CP039446.1	See Comparison
NZ_CP039442.1	See Comparison
CP052814.1	See Comparison
CP052812.1	See Comparison
CP052795.1	See Comparison
CP052802.1	See Comparison
CP052788.1	See Comparison
CP052786.1	See Comparison
CP052779.1	See Comparison
NZ_CP119981.1	See Comparison
CP070303.1	See Comparison
CP066336.1	See Comparison
CP052840.1	See Comparison
CP052838.1	See Comparison
CP052836.1	See Comparison
CP052830.1	See Comparison
CP052828.1	See Comparison
CP092302.1	See Comparison
NZ_CP099762.1	See Comparison
NZ_OW849859.1	See Comparison
CP092295.1	See Comparison
CP074344.1	See Comparison
CP082618.1	See Comparison
CP082539.1	See Comparison
CP074342.1	See Comparison
NZ_CP016409.1	See Comparison
NZ_CP016407.1	See Comparison
NZ_CP016413.1	See Comparison
CP038508.1	See Comparison
NZ_CP133182.1	See Comparison
CP052840.1	See Comparison
NZ_CP148819.1	See Comparison
NZ_CP148827.1	See Comparison
NZ_CP148823.1	See Comparison
NZ_CP148829.1	See Comparison
NZ_CP039444.1	See Comparison
NZ_CP039446.1	See Comparison
NZ_CP039442.1	See Comparison
CP052838.1	See Comparison
CP052836.1	See Comparison
CP052830.1	See Comparison
CP052828.1	See Comparison
CP052802.1	See Comparison
CP052788.1	See Comparison
CP052814.1	See Comparison
CP052786.1	See Comparison
CP052779.1	See Comparison
CP052812.1	See Comparison
CP052795.1	See Comparison
CP070303.1	See Comparison
NZ_CP099762.1	See Comparison
CP066336.1	See Comparison
NZ_CP119981.1	See Comparison
NZ_OW849859.1	See Comparison
CP082618.1	See Comparison
CP092302.1	See Comparison
CP092295.1	See Comparison
CP082539.1	See Comparison
CP074344.1	See Comparison
CP074342.1	See Comparison
NZ_CP016409.1	See Comparison
NZ_CP016407.1	See Comparison
NZ_CP016413.1	See Comparison
CP038508.1	See Comparison
NZ_CP148823.1	See Comparison
NZ_CP133182.1	See Comparison
NZ_CP148829.1	See Comparison
NZ_CP119981.1	See Comparison
NZ_CP148819.1	See Comparison
NZ_CP148827.1	See Comparison
CP052840.1	See Comparison
CP052838.1	See Comparison
CP052836.1	See Comparison
CP052830.1	See Comparison
CP052828.1	See Comparison
CP052814.1	See Comparison
CP052812.1	See Comparison
CP052795.1	See Comparison
CP052804.1	See Comparison
CP052802.1	See Comparison
CP052788.1	See Comparison
CP052786.1	See Comparison
CP052779.1	See Comparison
CP070303.1	See Comparison
CP066336.1	See Comparison
NZ_CP039444.1	See Comparison
NZ_CP039446.1	See Comparison
NZ_CP039442.1	See Comparison
NZ_OW849859.1	See Comparison
NZ_CP099762.1	See Comparison
CP092302.1	See Comparison
CP092295.1	See Comparison
NZ_CP148819.1	See Comparison
CP082618.1	See Comparison
CP082539.1	See Comparison
NZ_CP016409.1	See Comparison
NZ_CP016407.1	See Comparison
NZ_CP016413.1	See Comparison
CP038508.1	See Comparison
NZ_CP133182.1	See Comparison
NZ_CP148827.1	See Comparison
NZ_CP148823.1	See Comparison
NZ_CP148829.1	See Comparison
CP074344.1	See Comparison
CP074342.1	See Comparison
NZ_CP099762.1	See Comparison
NZ_CP039444.1	See Comparison
NZ_CP039446.1	See Comparison
NZ_CP039442.1	See Comparison
CP070303.1	See Comparison
NZ_CP119981.1	See Comparison
CP052840.1	See Comparison
CP052838.1	See Comparison
CP052836.1	See Comparison
CP052830.1	See Comparison
CP052828.1	See Comparison
CP052814.1	See Comparison
CP052812.1	See Comparison
CP052795.1	See Comparison
CP052802.1	See Comparison
CP052788.1	See Comparison
CP052786.1	See Comparison
CP052779.1	See Comparison
CP066336.1	See Comparison
NZ_OW849859.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore