Plasmid NZ_CP119453.1

Sequence

Nucleotide Information

Accession NZ_CP119453.1
Description Shigella dysenteriae strain NCDC 599-52 plasmid p2, complete sequence
Source refseq
Topology circular
Length 5153 bp
GC Content 0.46 %
Created at NCBI Oct. 7, 2023



Assembly

Genome Data Information

Accession GCF_032363495.1
Assembly Coverage 250


Biosample

Curated Collection Information

Accession 33336696

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA
Original Query Type name
Coordinates (Lat/Lon) 39.78/-100.45
Address USA

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Shigellosis
DOID/SYMP
  • Shigellosis (DOID:12385 )
  • A primary bacterial infectious disease that results_in infection located_in epithelium of colon, has_material_basis_in Shigella boydii, has_material_basis_in Shigella dysenteriae, has_material_basis_in Shigella flexneri, or has_material_basis_in Shigella sonnei, which produce toxins that can attack the lining of the large intestine, causing swelling, ulcers on the intestinal wall, and bloody diarrhea. The bacteria are transmitted_by ingestion of food and water contaminated with feces.
    • Has_material_basis_in: ['shigella boydii', 'shigella dysenteriae', 'shigella flexneri', 'shigella sonnei']

Visualization




Similar Plasmids

based on Mash distance

CP077391.1 See Comparison
CP077316.1 See Comparison
NC_018996.1 See Comparison
NC_013589.1 See Comparison
NZ_CP023650.1 See Comparison
NZ_CP053386.1 See Comparison
CP048872.1 See Comparison
NZ_OZ039049.1 See Comparison
NZ_CP147580.1 See Comparison
NZ_CP147589.1 See Comparison
NZ_CP054358.1 See Comparison
NZ_CP051704.1 See Comparison
NZ_CP070164.1 See Comparison
NZ_CP069896.1 See Comparison
NZ_CP074490.1 See Comparison
NZ_CP120565.1 See Comparison
NZ_OP242250.1 See Comparison
CP077391.1 See Comparison
NZ_CP109778.1 See Comparison
CP077316.1 See Comparison
NC_013589.1 See Comparison
NC_018996.1 See Comparison
NZ_CP147580.1 See Comparison
NZ_CP023650.1 See Comparison
NZ_OZ039049.1 See Comparison
NZ_CP051704.1 See Comparison
NZ_CP147589.1 See Comparison
NZ_CP054358.1 See Comparison
CP048872.1 See Comparison
NZ_CP070164.1 See Comparison
NZ_CP069896.1 See Comparison
NZ_CP120565.1 See Comparison
NZ_CP053386.1 See Comparison
NZ_OP242250.1 See Comparison
CP077391.1 See Comparison
NZ_CP074490.1 See Comparison
NZ_CP109778.1 See Comparison
CP077316.1 See Comparison
NZ_CP023650.1 See Comparison
NC_018996.1 See Comparison
NC_013589.1 See Comparison
NZ_CP054358.1 See Comparison
NZ_OZ039049.1 See Comparison
NZ_CP147580.1 See Comparison
NZ_CP147589.1 See Comparison
NZ_CP051704.1 See Comparison
NZ_CP053386.1 See Comparison
NZ_CP070164.1 See Comparison
NZ_CP069896.1 See Comparison
CP048872.1 See Comparison
NC_013589.1 See Comparison
NZ_CP120565.1 See Comparison
NZ_OP242250.1 See Comparison
CP077391.1 See Comparison
CP077316.1 See Comparison
NC_018996.1 See Comparison
NZ_CP074490.1 See Comparison
NZ_CP109778.1 See Comparison
NZ_CP051704.1 See Comparison
NZ_CP147580.1 See Comparison
NZ_CP054358.1 See Comparison
NZ_CP023650.1 See Comparison
NZ_OZ039049.1 See Comparison
NZ_CP147589.1 See Comparison
CP048872.1 See Comparison
NZ_CP070164.1 See Comparison
NZ_CP069896.1 See Comparison
NC_018996.1 See Comparison
NZ_CP053386.1 See Comparison
NZ_CP120565.1 See Comparison
NZ_OP242250.1 See Comparison
NZ_CP074490.1 See Comparison
CP077391.1 See Comparison
NZ_CP109778.1 See Comparison
CP077316.1 See Comparison
NZ_CP023650.1 See Comparison
NC_013589.1 See Comparison
NZ_CP051704.1 See Comparison
NZ_CP119453.1 See Comparison
NZ_OZ039049.1 See Comparison
NZ_CP147580.1 See Comparison
NZ_CP147589.1 See Comparison
NZ_CP054358.1 See Comparison
NZ_CP070164.1 See Comparison
NZ_CP069896.1 See Comparison
CP048872.1 See Comparison
NZ_CP053386.1 See Comparison
NZ_CP120565.1 See Comparison
NZ_CP074490.1 See Comparison
NZ_OP242250.1 See Comparison
NZ_CP109778.1 See Comparison
CP077391.1 See Comparison
CP077316.1 See Comparison
NZ_OZ039049.1 See Comparison
NC_018996.1 See Comparison
NC_013589.1 See Comparison
NZ_CP023650.1 See Comparison
NZ_CP051704.1 See Comparison
NZ_CP147580.1 See Comparison
NZ_CP147589.1 See Comparison
NZ_CP054358.1 See Comparison
NZ_CP120565.1 See Comparison
NZ_CP070164.1 See Comparison
NZ_CP069896.1 See Comparison
CP048872.1 See Comparison
NZ_CP053386.1 See Comparison
NZ_CP109778.1 See Comparison
NZ_OP242250.1 See Comparison
NZ_CP074490.1 See Comparison


Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore