Plasmid NZ_CP051704.1

Sequence

Nucleotide Information

Accession NZ_CP051704.1
Description Escherichia coli strain SCU-125 plasmid pSCU-125-4, complete sequence
Source refseq
Topology linear
Length 5153 bp
GC Content 0.46 %
Created at NCBI May 2, 2020



Assembly

Genome Data Information

Accession GCF_012934655.2
Assembly Coverage 14


Biosample

Curated Collection Information
Accession 14609785

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,California
Original Query Type name
Coordinates (Lat/Lon) 36.70/-118.76
Address USA,California

ECOSYSTEM
Original Query Homo sapiens,whole organism,rectal swab from healthy college student
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP077391.1 See Comparison
CP077316.1 See Comparison
NC_018996.1 See Comparison
NC_013589.1 See Comparison
NC_009346.1 See Comparison
NZ_CP023650.1 See Comparison
NZ_CP124402.1 See Comparison
NZ_CP119453.1 See Comparison
NZ_OZ039049.1 See Comparison
NZ_CP053386.1 See Comparison
NZ_CP147589.1 See Comparison
NZ_CP069938.1 See Comparison
CP048872.1 See Comparison
NZ_CP147580.1 See Comparison
NZ_CP054358.1 See Comparison
NZ_CP070164.1 See Comparison
NZ_CP069896.1 See Comparison
NZ_OP242250.1 See Comparison
NZ_CP120565.1 See Comparison
NZ_CP109778.1 See Comparison
NZ_CP074490.1 See Comparison
NZ_CP147589.1 See Comparison
CP077391.1 See Comparison
CP077316.1 See Comparison
NC_013589.1 See Comparison
NZ_CP023650.1 See Comparison
NZ_OZ039049.1 See Comparison
NC_018996.1 See Comparison
NC_009346.1 See Comparison
NZ_CP119453.1 See Comparison
NZ_CP124402.1 See Comparison
NZ_CP070164.1 See Comparison
NZ_CP054358.1 See Comparison
NZ_CP147580.1 See Comparison
NZ_CP069896.1 See Comparison
NZ_CP069938.1 See Comparison
NZ_CP124402.1 See Comparison
NZ_CP053386.1 See Comparison
NZ_CP074490.1 See Comparison
NC_013589.1 See Comparison
NC_009346.1 See Comparison
CP048872.1 See Comparison
NZ_CP120565.1 See Comparison
NZ_OP242250.1 See Comparison
NZ_CP109778.1 See Comparison
CP077391.1 See Comparison
CP077316.1 See Comparison
NC_018996.1 See Comparison
NZ_CP023650.1 See Comparison
NZ_CP119453.1 See Comparison
NZ_OZ039049.1 See Comparison
NZ_CP074490.1 See Comparison
NZ_CP147580.1 See Comparison
NZ_CP070164.1 See Comparison
NZ_CP069896.1 See Comparison
NZ_CP069938.1 See Comparison
NZ_CP053386.1 See Comparison
NZ_CP147589.1 See Comparison
NZ_CP054358.1 See Comparison
CP048872.1 See Comparison
NZ_CP120565.1 See Comparison
NZ_OP242250.1 See Comparison
NZ_OZ039049.1 See Comparison
CP077391.1 See Comparison
CP077316.1 See Comparison
NC_013589.1 See Comparison
NC_009346.1 See Comparison
NZ_CP109778.1 See Comparison
NC_018996.1 See Comparison
NZ_CP023650.1 See Comparison
NZ_CP119453.1 See Comparison
NZ_CP124402.1 See Comparison
NZ_CP147580.1 See Comparison
NZ_CP147589.1 See Comparison
NZ_CP074490.1 See Comparison
NZ_CP054358.1 See Comparison
NZ_CP053386.1 See Comparison
NZ_CP070164.1 See Comparison
NZ_CP069896.1 See Comparison
NZ_CP069938.1 See Comparison
CP048872.1 See Comparison
NZ_CP120565.1 See Comparison
NZ_OP242250.1 See Comparison
NZ_CP070164.1 See Comparison
CP077316.1 See Comparison
NC_013589.1 See Comparison
NC_009346.1 See Comparison
NZ_CP119453.1 See Comparison
NZ_CP147580.1 See Comparison
NZ_CP147589.1 See Comparison
NZ_CP054358.1 See Comparison
NZ_CP109778.1 See Comparison
CP077391.1 See Comparison
NC_018996.1 See Comparison
NZ_CP023650.1 See Comparison
NZ_CP124402.1 See Comparison
NZ_OZ039049.1 See Comparison
NZ_CP051704.1 See Comparison
NZ_CP069896.1 See Comparison
NZ_CP069938.1 See Comparison
NZ_CP053386.1 See Comparison
CP048872.1 See Comparison
CP077391.1 See Comparison
NZ_OP242250.1 See Comparison
NZ_CP074490.1 See Comparison
NZ_CP109778.1 See Comparison
NZ_CP120565.1 See Comparison
CP077316.1 See Comparison
NZ_CP023650.1 See Comparison
NC_018996.1 See Comparison
NC_009346.1 See Comparison
NC_013589.1 See Comparison
NZ_OZ039049.1 See Comparison
NZ_CP124402.1 See Comparison
NZ_CP119453.1 See Comparison
NZ_CP147580.1 See Comparison
NZ_CP147589.1 See Comparison
NZ_CP053386.1 See Comparison
NZ_CP070164.1 See Comparison
NZ_CP069896.1 See Comparison
NZ_CP069938.1 See Comparison
NZ_CP054358.1 See Comparison
CP048872.1 See Comparison
NZ_CP109778.1 See Comparison
NZ_CP120565.1 See Comparison
NZ_OP242250.1 See Comparison
NZ_CP074490.1 See Comparison
CP077391.1 See Comparison
CP077316.1 See Comparison
NC_009346.1 See Comparison
NC_018996.1 See Comparison
NZ_CP119453.1 See Comparison
NZ_CP023650.1 See Comparison
NC_013589.1 See Comparison
NZ_CP069896.1 See Comparison
NZ_CP124402.1 See Comparison
NZ_CP147580.1 See Comparison
NZ_CP147589.1 See Comparison
NZ_CP054358.1 See Comparison
NZ_OZ039049.1 See Comparison
NZ_CP069938.1 See Comparison
NZ_CP120565.1 See Comparison
NZ_CP053386.1 See Comparison
NZ_CP070164.1 See Comparison
CP048872.1 See Comparison
NZ_OP242250.1 See Comparison
NZ_CP074490.1 See Comparison
NZ_CP109778.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2