Plasmid NZ_CP109778.1

Sequence

Nucleotide Information

Accession NZ_CP109778.1
Description Shigella sonnei strain CIP_106347 plasmid unnamed2, complete sequence
Source refseq
Topology circular
Length 5153 bp
GC Content 0.46 %
Created at NCBI Nov. 1, 2022



Assembly

Genome Data Information

Accession GCF_025908455.1
Assembly Coverage 1


Biosample

Curated Collection Information
Accession 31285702

PLASMID INFORMATION
Genotype 3.7

GEOGRAPHICAL INFORMATION
Original Query 48.8566N;2.3522E
Original Query Type coordinates
Coordinates (Lat/Lon) 48.86/2.35
Address Hôtel de Ville, Place de l'Hôtel de Ville, Quartier Saint-Merri, 4th Arrondissement, Paris, Ile-de-France, Metropolitan France, 75004, France

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Sex male

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NC_018996.1 See Comparison
NC_009346.1 See Comparison
NZ_CP023650.1 See Comparison
NZ_CP119453.1 See Comparison
NZ_CP147580.1 See Comparison
NZ_CP147589.1 See Comparison
NZ_CP074490.1 See Comparison
CP048872.1 See Comparison
NZ_CP051704.1 See Comparison
NC_018996.1 See Comparison
CP048872.1 See Comparison
NZ_CP074490.1 See Comparison
NC_018996.1 See Comparison
NC_009346.1 See Comparison
NZ_CP023650.1 See Comparison
NZ_CP119453.1 See Comparison
NZ_CP147580.1 See Comparison
NZ_CP147589.1 See Comparison
NZ_CP051704.1 See Comparison
NZ_CP023650.1 See Comparison
NC_009346.1 See Comparison
NZ_CP051704.1 See Comparison
NZ_CP119453.1 See Comparison
NZ_CP147580.1 See Comparison
NZ_CP147589.1 See Comparison
NC_009346.1 See Comparison
CP048872.1 See Comparison
NZ_CP074490.1 See Comparison
NC_018996.1 See Comparison
NZ_CP023650.1 See Comparison
NZ_CP119453.1 See Comparison
NZ_CP147580.1 See Comparison
NZ_CP147589.1 See Comparison
NC_009346.1 See Comparison
CP048872.1 See Comparison
NZ_CP074490.1 See Comparison
NZ_CP051704.1 See Comparison
NC_018996.1 See Comparison
NZ_CP051704.1 See Comparison
NZ_CP023650.1 See Comparison
NZ_CP119453.1 See Comparison
NZ_CP147580.1 See Comparison
NZ_CP147589.1 See Comparison
CP048872.1 See Comparison
NC_018996.1 See Comparison
NZ_CP074490.1 See Comparison
NZ_CP023650.1 See Comparison
NC_009346.1 See Comparison
NZ_CP147589.1 See Comparison
NZ_CP119453.1 See Comparison
CP048872.1 See Comparison
NZ_CP147580.1 See Comparison
NZ_CP051704.1 See Comparison
NZ_CP074490.1 See Comparison
NZ_CP109778.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore