Plasmid NZ_CP117339.1

Sequence

Nucleotide Information

Accession NZ_CP117339.1
Description Salmonella enterica subsp. enterica serovar Typhimurium strain RM095 plasmid pRM095_1, complete sequence
Source refseq
Topology circular
Length 146580 bp
GC Content 0.52 %
Created at NCBI March 3, 2023



Assembly

Genome Data Information

Accession GCF_028893155.1
Assembly Coverage 456


Biosample

Curated Collection Information

Accession 32950800

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,Nebraska
Original Query Type name
Coordinates (Lat/Lon) 41.74/-99.59
Address USA,Nebraska

ECOSYSTEM
Original Query Bos taurus,Liver, gallbladder, lymph node
Classification host_associated,liver
Host-associated Taxon

DISEASE
Original Query Abomasitis, enteritis, peritonitis
DOID/SYMP
  • Mastitis (DOID:10690 )
  • A breast disease characterized by painful infection of the breast tissue.
  • Peritonitis (DOID:8283 )
  • A gastrointestinal system disease that involves inflammation of the peritoneum resulting from perforation of the gastrointestinal tract, which produces immediate chemical inflammation followed shortly by infection from intestinal organisms. Peritonitis can also result from appendicitis, diverticulitis, strangulating intestinal obstruction, pancreatitis, pelvic inflammatory disease, mesenteric ischemia, intraperitoneal blood, barium, or peritoneo-systemic shunts, drains, and dialysis catheters in the peritoneal cavity. The symptoms include abdominal pain and tenderness, fever, fluid in the abdomen, nausea, vomiting and low urine output.
  • Enteritis (SYMP:0000039 )
  • Enteritis is a digestive system symptom involving the inflammation of the small intestines and especially of the human ileum.

Visualization




Similar Plasmids

based on Mash distance

CP082546.1 See Comparison
CP082452.1 See Comparison
NZ_CP014978.1 See Comparison
NZ_CP009567.1 See Comparison
NZ_CP009560.1 See Comparison
NC_012693.1 See Comparison
NZ_CP041209.1 See Comparison
NZ_CP025240.1 See Comparison
NZ_CP025231.1 See Comparison
NZ_CP032391.1 See Comparison
CP082452.1 See Comparison
NZ_CP132696.1 See Comparison
NZ_CP104637.1 See Comparison
NZ_CP117366.1 See Comparison
NZ_CP014978.1 See Comparison
CP082546.1 See Comparison
NZ_CP104637.1 See Comparison
NC_012693.1 See Comparison
NZ_CP032391.1 See Comparison
NZ_CP009567.1 See Comparison
NZ_CP009560.1 See Comparison
NZ_CP041209.1 See Comparison
NZ_CP025240.1 See Comparison
NZ_CP025231.1 See Comparison
NZ_CP132696.1 See Comparison
NZ_CP117366.1 See Comparison
CP082546.1 See Comparison
CP082452.1 See Comparison
NZ_CP014978.1 See Comparison
NZ_CP041209.1 See Comparison
NC_012693.1 See Comparison
NZ_CP009567.1 See Comparison
NZ_CP009560.1 See Comparison
NZ_CP025240.1 See Comparison
NZ_CP025231.1 See Comparison
NZ_CP132696.1 See Comparison
NZ_CP032391.1 See Comparison
CP082546.1 See Comparison
NZ_CP117339.1 See Comparison
NZ_CP117366.1 See Comparison
NZ_CP104637.1 See Comparison
CP082452.1 See Comparison
NZ_CP025240.1 See Comparison
NZ_CP041209.1 See Comparison
NZ_CP014978.1 See Comparison
NZ_CP009567.1 See Comparison
NZ_CP009560.1 See Comparison
NC_012693.1 See Comparison
NZ_CP025231.1 See Comparison
NZ_CP132696.1 See Comparison
NZ_CP032391.1 See Comparison
NZ_CP117366.1 See Comparison
NZ_CP041209.1 See Comparison
CP082546.1 See Comparison
NC_012693.1 See Comparison
NZ_CP104637.1 See Comparison
CP082452.1 See Comparison
NZ_CP014978.1 See Comparison
NZ_CP009567.1 See Comparison
NZ_CP009560.1 See Comparison
NZ_CP132696.1 See Comparison
NZ_CP032391.1 See Comparison
NZ_CP025240.1 See Comparison
NZ_CP025231.1 See Comparison
NZ_CP117366.1 See Comparison
NZ_CP104637.1 See Comparison
CP082452.1 See Comparison
NZ_CP025240.1 See Comparison
NZ_CP009567.1 See Comparison
CP082546.1 See Comparison
NZ_CP014978.1 See Comparison
NZ_CP009560.1 See Comparison
NC_012693.1 See Comparison
NZ_CP041209.1 See Comparison
NZ_CP025231.1 See Comparison
NZ_CP132696.1 See Comparison
NZ_CP032391.1 See Comparison
NZ_CP117366.1 See Comparison
NZ_CP104637.1 See Comparison


Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore