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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP025231.1
Sequence
Nucleotide Information
Accession
NZ_CP025231.1
Description
Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1924 plasmid pSNE1-1924, complete sequence
Source
refseq
Topology
circular
Length
158213 bp
GC Content
0.52 %
Created at NCBI
Feb. 7, 2019
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1924 (1454617)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Salmonella (590)
Species
Salmonella_enterica (28901)
Strain
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USDA-ARS-USMARC-1924 (1454617)
Assembly
Genome Data Information
Accession
GCF_004136055.1
Assembly Coverage
130.47
Biosample
Curated Collection Information
Accession
2716894
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
USA
Original Query Type
name
Coordinates (Lat/Lon)
39.78/-100.45
Address
USA
ECOSYSTEM
Original Query
Bovine,bovine hide
Classification
host_associated,skin
Host-associated Taxon
Bos taurus (
9913
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Similar Plasmids
based on Mash distance
NZ_CP117339.1
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CP082546.1
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NZ_CP014978.1
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CP082452.1
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NZ_CP025240.1
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NZ_CP009567.1
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NZ_CP009560.1
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NC_012693.1
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NZ_CP041209.1
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NZ_CP032391.1
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NZ_CP104637.1
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NZ_CP117339.1
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NZ_CP117366.1
See Comparison
CP082452.1
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CP082546.1
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NZ_CP032391.1
See Comparison
NZ_CP014978.1
See Comparison
NZ_CP025240.1
See Comparison
NZ_CP009567.1
See Comparison
NZ_CP009560.1
See Comparison
NC_012693.1
See Comparison
NZ_CP041209.1
See Comparison
CP082546.1
See Comparison
NZ_CP132696.1
See Comparison
NZ_CP117339.1
See Comparison
NZ_CP117366.1
See Comparison
CP082452.1
See Comparison
NZ_CP104637.1
See Comparison
NZ_CP041209.1
See Comparison
NZ_CP009567.1
See Comparison
NZ_CP009560.1
See Comparison
NZ_CP014978.1
See Comparison
NC_012693.1
See Comparison
NZ_CP132696.1
See Comparison
NZ_CP032391.1
See Comparison
NZ_CP025240.1
See Comparison
CP082452.1
See Comparison
NZ_CP117339.1
See Comparison
NZ_CP117366.1
See Comparison
NZ_CP104637.1
See Comparison
CP082546.1
See Comparison
NZ_CP009567.1
See Comparison
NZ_CP014978.1
See Comparison
NZ_CP009560.1
See Comparison
NC_012693.1
See Comparison
NZ_CP032391.1
See Comparison
NZ_CP025240.1
See Comparison
NZ_CP041209.1
See Comparison
NZ_CP104637.1
See Comparison
NZ_CP132696.1
See Comparison
NZ_CP117339.1
See Comparison
NZ_CP117366.1
See Comparison
NZ_CP009567.1
See Comparison
CP082546.1
See Comparison
CP082452.1
See Comparison
NZ_CP014978.1
See Comparison
NZ_CP009560.1
See Comparison
NZ_CP041209.1
See Comparison
NC_012693.1
See Comparison
NZ_CP025240.1
See Comparison
NZ_CP132696.1
See Comparison
NZ_CP032391.1
See Comparison
NZ_CP104637.1
See Comparison
NZ_CP117339.1
See Comparison
NZ_CP117366.1
See Comparison
NZ_CP132696.1
See Comparison
CP082546.1
See Comparison
CP082452.1
See Comparison
NZ_CP041209.1
See Comparison
NZ_CP032391.1
See Comparison
NZ_CP014978.1
See Comparison
NZ_CP009567.1
See Comparison
NZ_CP009560.1
See Comparison
NC_012693.1
See Comparison
NZ_CP025240.1
See Comparison
NZ_CP025231.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore