Plasmid NZ_CP009560.1

Sequence

Nucleotide Information

Accession NZ_CP009560.1
Description Salmonella enterica subsp. enterica serovar Newport str. CVM 22425 plasmid pCVM22425, complete sequence
Source refseq
Topology circular
Length 158195 bp
GC Content 0.52 %
Created at NCBI March 1, 2015



Assembly

Genome Data Information

Accession GCF_000272775.4
Assembly Coverage 100


Biosample

Curated Collection Information

Accession 1813481

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,AZ
Original Query Type name
Coordinates (Lat/Lon) 34.40/-111.76
Address USA,AZ

ECOSYSTEM
Original Query Bos taurus,cattle
Classification host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization




Similar Plasmids

based on Mash distance

NZ_CP117339.1 See Comparison
NZ_CP117366.1 See Comparison
NZ_CP104637.1 See Comparison
CP082546.1 See Comparison
CP082452.1 See Comparison
NZ_CP014978.1 See Comparison
NZ_CP009567.1 See Comparison
NZ_CP032391.1 See Comparison
NC_012693.1 See Comparison
NZ_CP041209.1 See Comparison
NZ_CP025240.1 See Comparison
NZ_CP025231.1 See Comparison
NZ_CP032391.1 See Comparison
NZ_CP117339.1 See Comparison
NZ_CP117366.1 See Comparison
CP082546.1 See Comparison
CP082452.1 See Comparison
NC_012693.1 See Comparison
NZ_CP041209.1 See Comparison
NZ_CP025240.1 See Comparison
NZ_CP025231.1 See Comparison
NZ_CP132696.1 See Comparison
NZ_CP104637.1 See Comparison
NZ_CP014978.1 See Comparison
NZ_CP009567.1 See Comparison
NZ_CP132696.1 See Comparison
NZ_CP117339.1 See Comparison
NZ_CP117366.1 See Comparison
NZ_CP104637.1 See Comparison
NC_012693.1 See Comparison
CP082546.1 See Comparison
CP082452.1 See Comparison
NZ_CP014978.1 See Comparison
NZ_CP009567.1 See Comparison
NZ_CP041209.1 See Comparison
NZ_CP132696.1 See Comparison
NZ_CP025240.1 See Comparison
NZ_CP025231.1 See Comparison
NZ_CP032391.1 See Comparison
NZ_CP104637.1 See Comparison
NZ_CP117339.1 See Comparison
NZ_CP117366.1 See Comparison
NZ_CP132696.1 See Comparison
NC_012693.1 See Comparison
NZ_CP041209.1 See Comparison
NZ_CP032391.1 See Comparison
CP082546.1 See Comparison
CP082452.1 See Comparison
NZ_CP014978.1 See Comparison
NZ_CP009567.1 See Comparison
NZ_CP025240.1 See Comparison
NZ_CP025231.1 See Comparison
CP082546.1 See Comparison
NZ_CP104637.1 See Comparison
NZ_CP117339.1 See Comparison
NZ_CP117366.1 See Comparison
NZ_CP014978.1 See Comparison
CP082452.1 See Comparison
NZ_CP009567.1 See Comparison
CP082546.1 See Comparison
NC_012693.1 See Comparison
NZ_CP041209.1 See Comparison
NZ_CP104637.1 See Comparison
NZ_CP025240.1 See Comparison
NZ_CP025231.1 See Comparison
NZ_CP032391.1 See Comparison
NZ_CP132696.1 See Comparison
NZ_CP117339.1 See Comparison
NZ_CP117366.1 See Comparison
CP082452.1 See Comparison
NZ_CP014978.1 See Comparison
NZ_CP009567.1 See Comparison
NZ_CP009560.1 See Comparison
NC_012693.1 See Comparison
NZ_CP025240.1 See Comparison
NZ_CP025231.1 See Comparison
NZ_CP041209.1 See Comparison
NZ_CP032391.1 See Comparison
NZ_CP132696.1 See Comparison


Plasmid Visualization


SourceElement Name Display Sequence Favorite
amrfinderplusaph(3'')-Ibcopy
amrfinderplusfloRcopy
amrfinderplusmerRcopy
amrfinderplusmerPcopy
amrfinderplusmerTcopy
amrfinderplusmerBcopy
amrfinderplusmerDcopy
amrfinderplusmerEcopy
amrfinderplussul2copy
amrfinderplustet(A)copy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 192 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_012885_00088MPF_T1544717891plus98.1610001640
mate-pair-formationNC_012885_00091MPF_F1871619978plus94.0761000821
mate-pair-formationNC_023291_00077MPF_F2064621650plus99.4031000582
mate-pair-formationNC_012885_00167MPF_F8204083470plus97.4841000931
mate-pair-formationNC_009140_00071MPF_F141515143377plus10010001177
mate-pair-formationNC_014170_00023MPF_F147800148714plus92.1311000569
mate-pair-formationNC_012885_00083MPF_F148714150027plus90.4111000752
mate-pair-formationNC_016974_00085MPF_F150027150602plus99.4791001.07e-114365
mate-pair-formationNC_012885_00088MPF_T152245152946minus96.5811003.45e-147486
relaxaseNC_012885_00072MOBH138546141512plus88.7999901597
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 13 entries