Plasmid NZ_CP025240.1

Sequence

Nucleotide Information

Accession NZ_CP025240.1
Description Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1928 plasmid pSNE3-1928, complete sequence
Source refseq
Topology circular
Length 146581 bp
GC Content 0.52 %
Created at NCBI Feb. 7, 2019



Assembly

Genome Data Information

Accession GCF_004136135.1
Assembly Coverage 128.75


Biosample

Curated Collection Information
Accession 2716897

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA
Original Query Type name
Coordinates (Lat/Lon) 39.78/-100.45
Address USA

ECOSYSTEM
Original Query Bovine,bovine peripheral lymph node
Classification host_associated,lymphatic_system
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP117339.1 See Comparison
NZ_CP117366.1 See Comparison
NZ_CP104637.1 See Comparison
NZ_CP025231.1 See Comparison
CP082546.1 See Comparison
CP082452.1 See Comparison
NZ_CP014978.1 See Comparison
NZ_CP009567.1 See Comparison
NZ_CP009560.1 See Comparison
NC_012693.1 See Comparison
NZ_CP041209.1 See Comparison
NZ_CP032391.1 See Comparison
NZ_CP132696.1 See Comparison
CP082546.1 See Comparison
NZ_CP117339.1 See Comparison
NZ_CP117366.1 See Comparison
NZ_CP104637.1 See Comparison
NZ_CP025231.1 See Comparison
NZ_CP014978.1 See Comparison
NZ_CP009567.1 See Comparison
NZ_CP009560.1 See Comparison
NC_012693.1 See Comparison
NZ_CP041209.1 See Comparison
NZ_CP032391.1 See Comparison
NZ_CP132696.1 See Comparison
NZ_CP104637.1 See Comparison
NZ_CP117339.1 See Comparison
NZ_CP117366.1 See Comparison
CP082452.1 See Comparison
CP082452.1 See Comparison
NZ_CP014978.1 See Comparison
CP082546.1 See Comparison
NZ_CP009567.1 See Comparison
NZ_CP009560.1 See Comparison
NC_012693.1 See Comparison
NZ_CP041209.1 See Comparison
NZ_CP025231.1 See Comparison
NZ_CP104637.1 See Comparison
NZ_CP032391.1 See Comparison
NZ_CP132696.1 See Comparison
NZ_CP117339.1 See Comparison
NZ_CP117366.1 See Comparison
NC_012693.1 See Comparison
CP082546.1 See Comparison
CP082452.1 See Comparison
NZ_CP014978.1 See Comparison
NZ_CP041209.1 See Comparison
NZ_CP025231.1 See Comparison
NZ_CP032391.1 See Comparison
NZ_CP132696.1 See Comparison
NZ_CP009567.1 See Comparison
NZ_CP009560.1 See Comparison
NZ_CP117339.1 See Comparison
NZ_CP117366.1 See Comparison
NZ_CP104637.1 See Comparison
CP082546.1 See Comparison
CP082452.1 See Comparison
NZ_CP009567.1 See Comparison
NZ_CP014978.1 See Comparison
NZ_CP009560.1 See Comparison
NZ_CP041209.1 See Comparison
NZ_CP025231.1 See Comparison
CP082546.1 See Comparison
CP082452.1 See Comparison
NZ_CP014978.1 See Comparison
NZ_CP041209.1 See Comparison
NZ_CP025240.1 See Comparison
NZ_CP025231.1 See Comparison
NZ_CP032391.1 See Comparison
NC_012693.1 See Comparison
NZ_CP032391.1 See Comparison
NZ_CP132696.1 See Comparison
NZ_CP117339.1 See Comparison
NZ_CP117366.1 See Comparison
NZ_CP104637.1 See Comparison
NZ_CP009567.1 See Comparison
NZ_CP009560.1 See Comparison
NC_012693.1 See Comparison
NZ_CP132696.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore