Plasmid NZ_CP116083.1

Sequence

Nucleotide Information

Accession NZ_CP116083.1
Description Escherichia coli strain DETEC-S586 plasmid pDETEC53, complete sequence
Source refseq
Topology circular
Length 4715 bp
GC Content 0.41 %
Created at NCBI Jan. 25, 2023



Assembly

Genome Data Information

Accession GCF_027944615.1
Assembly Coverage 10


Biosample

Curated Collection Information
Accession 31988516

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Guangzhou
Original Query Type name
Coordinates (Lat/Lon) 23.13/113.26
Address China,Guangzhou

ECOSYSTEM
Original Query whole organism,ICU staff rectal swab
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_OW970558.1 See Comparison
NZ_OW970362.1 See Comparison
NZ_OW970566.1 See Comparison
NZ_OW970419.1 See Comparison
NZ_OW970442.1 See Comparison
NZ_OW970535.1 See Comparison
NZ_OW970483.1 See Comparison
NZ_OW970519.1 See Comparison
NZ_OW970490.1 See Comparison
NZ_OW970458.1 See Comparison
NZ_OW970371.1 See Comparison
NZ_OW970546.1 See Comparison
NZ_OW970498.1 See Comparison
NZ_OW970427.1 See Comparison
OW967821.1 See Comparison
NZ_CP069209.1 See Comparison
NZ_OV049811.1 See Comparison
NZ_OW970535.1 See Comparison
NZ_LN824137.1 See Comparison
NZ_CP050369.1 See Comparison
NZ_CP062891.1 See Comparison
NZ_OW970558.1 See Comparison
NZ_OW970362.1 See Comparison
NZ_OW970566.1 See Comparison
NZ_OW970483.1 See Comparison
NZ_OW970419.1 See Comparison
NZ_OW970498.1 See Comparison
NZ_OW970519.1 See Comparison
NZ_OW970490.1 See Comparison
NZ_OW970427.1 See Comparison
NZ_OW970442.1 See Comparison
NZ_OW970458.1 See Comparison
NZ_OW970371.1 See Comparison
NZ_OW970546.1 See Comparison
NZ_CP069209.1 See Comparison
OW967821.1 See Comparison
NZ_CP050369.1 See Comparison
NZ_LN824137.1 See Comparison
NZ_OV049811.1 See Comparison
NZ_CP062891.1 See Comparison
NZ_OW970362.1 See Comparison
NZ_OW970566.1 See Comparison
NZ_OW970419.1 See Comparison
NZ_OW970442.1 See Comparison
NZ_OW970483.1 See Comparison
NZ_OW970519.1 See Comparison
NZ_OW970490.1 See Comparison
NZ_OW970458.1 See Comparison
NZ_OW970558.1 See Comparison
NZ_OW970535.1 See Comparison
NZ_OW970427.1 See Comparison
NZ_OW970371.1 See Comparison
NZ_CP069209.1 See Comparison
NZ_OW970546.1 See Comparison
NZ_OW970498.1 See Comparison
OW967821.1 See Comparison
NZ_OV049811.1 See Comparison
NZ_LN824137.1 See Comparison
OW967821.1 See Comparison
NZ_OW970558.1 See Comparison
NZ_OW970362.1 See Comparison
NZ_OW970483.1 See Comparison
NZ_OW970519.1 See Comparison
NZ_OW970490.1 See Comparison
NZ_OW970458.1 See Comparison
NZ_OW970371.1 See Comparison
NZ_OW970546.1 See Comparison
NZ_OW970498.1 See Comparison
NZ_OW970427.1 See Comparison
NZ_CP050369.1 See Comparison
NZ_CP062891.1 See Comparison
NZ_OW970566.1 See Comparison
NZ_OW970419.1 See Comparison
NZ_OW970442.1 See Comparison
NZ_OW970535.1 See Comparison
NZ_OW970558.1 See Comparison
NZ_CP069209.1 See Comparison
NZ_OV049811.1 See Comparison
NZ_CP050369.1 See Comparison
NZ_OW970566.1 See Comparison
NZ_OW970419.1 See Comparison
NZ_LN824137.1 See Comparison
NZ_CP062891.1 See Comparison
NZ_OW970362.1 See Comparison
NZ_OW970442.1 See Comparison
NZ_OW970535.1 See Comparison
NZ_OW970483.1 See Comparison
NZ_CP069209.1 See Comparison
NZ_OW970519.1 See Comparison
OW967821.1 See Comparison
NZ_OW970490.1 See Comparison
NZ_OW970458.1 See Comparison
NZ_OW970371.1 See Comparison
NZ_OW970546.1 See Comparison
NZ_OW970498.1 See Comparison
NZ_OW970427.1 See Comparison
NZ_CP050369.1 See Comparison
NZ_LN824137.1 See Comparison
NZ_OV049811.1 See Comparison
NZ_CP062891.1 See Comparison
NZ_OW970566.1 See Comparison
NZ_OW970558.1 See Comparison
NZ_OW970419.1 See Comparison
NZ_OW970362.1 See Comparison
NZ_OW970458.1 See Comparison
NZ_OW970442.1 See Comparison
NZ_OW970371.1 See Comparison
NZ_OW970535.1 See Comparison
NZ_OW970546.1 See Comparison
NZ_OW970483.1 See Comparison
NZ_OW970498.1 See Comparison
NZ_OW970519.1 See Comparison
NZ_OW970490.1 See Comparison
NZ_OW970427.1 See Comparison
NZ_LN824137.1 See Comparison
OW967821.1 See Comparison
NZ_CP069209.1 See Comparison
NZ_OV049811.1 See Comparison
NZ_CP050369.1 See Comparison
NZ_CP062891.1 See Comparison
NZ_CP116083.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore