Plasmid NZ_OW970371.1
Sequence
Nucleotide Information
| Accession | NZ_OW970371.1 |
|---|---|
| Description | Klebsiella pneumoniae isolate 147 plasmid P6, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 4715 bp |
| GC Content | 0.41 % |
| Created at NCBI | May 20, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 22316561 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | Spain |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 39.33/-4.84 |
| Address | Spain |
ECOSYSTEM
| Original Query | Homo sapiens,Hospital Univeristario de Bellvitge (Barcelona) |
|---|---|
| Classification | anthropogenic,hospital,host_associated,location |
| Host-associated Taxon |
|
DISEASE
| Original Query | diseased |
|---|---|
| DOID/SYMP |
|
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
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Purples
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100
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B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | hypothetical protein | copy | ||
| PGAG | PP2C family serine/threonine-protein phosphatase | copy | ||
| PGAG | nucleotidyl transferase AbiEii/AbiGii toxin family protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | Rop family plasmid primer RNA-binding protein | copy | ||
| MOB-typer | MOBF | copy | ||
| MOB-typer | MOB_unknown | copy | ||
| MOB-typer | MOBP | copy | ||
| MOB-typer | rep_cluster_2350 | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 9 of 9 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| oriT | KT950740 | MOBF | 3723 | 3979 | minus | 96.124 | 89 | 5.65e-115 | 420 |
| oriT | NC_019986 | MOB_unknown | 4103 | 4202 | minus | 100 | 100 | 6.22e-45 | 185 |
| oriT | AP017298 | MOBP | 4505 | 4590 | minus | 100 | 100 | 3.03e-37 | 159 |
| replicon | CP035723_00002 | rep_cluster_2350 | 1 | 443 | plus | 94.369 | 100 | 0 | 678 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 4 of 4 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |