Plasmid NZ_CP116077.1

Sequence

Nucleotide Information

Accession NZ_CP116077.1
Description Escherichia coli strain DETEC-S586 plasmid pDETEC48, complete sequence
Source refseq
Topology circular
Length 70464 bp
GC Content 0.52 %
Created at NCBI Jan. 25, 2023



Assembly

Genome Data Information

Accession GCF_027944615.1
Assembly Coverage 10


Biosample

Curated Collection Information
Accession 31988516

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Guangzhou
Original Query Type name
Coordinates (Lat/Lon) 23.13/113.26
Address China,Guangzhou

ECOSYSTEM
Original Query whole organism,ICU staff rectal swab
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP116077.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGreplication regulatory protein RepAcopy
PGAGtapcopy
PGAGrepAcopy
PGAGyacAcopy
PGAGyacBcopy
PGAG3'-5' exonucleasecopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGdefcopy
PGAGDUF4440 domain-containing proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 101 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_022651_00077MPF_F3419734505plus99.029996.05e-63212
mate-pair-formationNC_010409_00124MPF_F3508335808plus98.3471002.81e-155484
mate-pair-formationNC_019094_00090MPF_F3581137202plus95.914960811
mate-pair-formationNC_017639_00094MPF_F3812238634plus98.2461005.42e-98316
mate-pair-formationNC_013437_00116MPF_T4028942904plus90.4829901634
mate-pair-formationNC_007675_00027MPF_F4329043919plus99.524977.18e-136427
mate-pair-formationNC_017639_00100MPF_F4391944875plus98.433910604
mate-pair-formationNC_018966_00040MPF_F4530645890plus97.949921.42e-124394
mate-pair-formationNC_019094_00068MPF_F4589047737plus94.15610001142
mate-pair-formationNC_009837_00049MPF_F5225155157plus90.6099801786
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 14 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2