Plasmid NZ_CP104650.1
Sequence
Nucleotide Information
| Accession | NZ_CP104650.1 |
|---|---|
| Description | Escherichia coli strain PNUSAE008512 plasmid unnamed1, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 94645 bp |
| GC Content | 0.48 % |
| Created at NCBI | Sept. 28, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Escherichia coli (562) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Escherichia (561) |
| Species | Escherichia_coli (562) |
| Strain |
Biosample
Curated Collection Information
| Accession | 7375592 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | USA,UT |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 39.42/-111.71 |
| Address | USA,UT |
ECOSYSTEM
| Original Query | bull manure |
|---|---|
| Classification | host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | toxB | copy | ||
| amrfinderplus | katP | copy | ||
| amrfinderplus | ehxA | copy | ||
| amrfinderplus | espP | copy | ||
| PGAG | traX | copy | ||
| PGAG | alpha/beta hydrolase | copy | ||
| PGAG | fertility inhibition protein FinO | copy | ||
| PGAG | ANR family transcriptional regulator | copy | ||
| PGAG | thermonuclease family protein | copy | ||
| PGAG | hha | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 85 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| relaxase | NC_021819_00066 | MOBP | 59526 | 59930 | minus | 86.667 | 100 | 1.2e-84 | 241 |
| replicon | 000136__AP014877_00014 | IncFIA | 4850 | 5707 | plus | 96.27 | 100 | 0 | 1408 |
| replicon | 000095__NZ_CP014273_00094 | IncFIB | 52814 | 53791 | minus | 98.057 | 100 | 0 | 1701 |
| replicon | KF954760 | IncFII | 60789 | 61056 | plus | 90.299 | 91 | 2.1299999999999998e-94 | 351 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 4 of 4 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |