Plasmid NZ_CP100712.1

Sequence

Nucleotide Information

Accession NZ_CP100712.1
Description Salmonella enterica subsp. enterica serovar Blockley strain R18.0186 plasmid pR18.0186_49k, complete sequence
Source refseq
Topology circular
Length 48530 bp
GC Content 0.44 %
Created at NCBI July 15, 2022



Assembly

Genome Data Information

Accession GCF_024266465.1
Assembly Coverage 331


Biosample

Curated Collection Information
Accession 29431224

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Taiwan,Taichung City
Original Query Type name
Coordinates (Lat/Lon) 24.17/120.68
Address Taiwan,Taichung City

ECOSYSTEM
Original Query Homo sapiens,stool
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 1
Host-associated Sex female

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP045512.1 See Comparison
NZ_CP045463.1 See Comparison
NZ_CP051334.1 See Comparison
NZ_CP051309.1 See Comparison
NZ_CP120672.1 See Comparison
NZ_CP100730.1 See Comparison
NZ_CP100672.1 See Comparison
NZ_CP012834.1 See Comparison
CP082438.1 See Comparison
CP074326.1 See Comparison
NZ_CP045512.1 See Comparison
CP149524.1 See Comparison
NZ_CP045463.1 See Comparison
NZ_CP051334.1 See Comparison
NZ_CP051309.1 See Comparison
NZ_CP012834.1 See Comparison
NZ_CP120672.1 See Comparison
CP082438.1 See Comparison
NZ_CP100730.1 See Comparison
NZ_CP100712.1 See Comparison
NZ_CP100672.1 See Comparison
CP074326.1 See Comparison
CP149524.1 See Comparison
NZ_CP051334.1 See Comparison
NZ_CP045512.1 See Comparison
NZ_CP045463.1 See Comparison
NZ_CP120672.1 See Comparison
NZ_CP051309.1 See Comparison
NZ_CP100730.1 See Comparison
NZ_CP100672.1 See Comparison
CP082438.1 See Comparison
NZ_CP045512.1 See Comparison
NZ_CP012834.1 See Comparison
CP074326.1 See Comparison
CP149524.1 See Comparison
NZ_CP045463.1 See Comparison
NZ_CP051309.1 See Comparison
NZ_CP051334.1 See Comparison
CP082438.1 See Comparison
NZ_CP120672.1 See Comparison
NZ_CP100730.1 See Comparison
NZ_CP100672.1 See Comparison
NZ_CP045512.1 See Comparison
NZ_CP012834.1 See Comparison
CP074326.1 See Comparison
CP149524.1 See Comparison
NZ_CP045463.1 See Comparison
NZ_CP051334.1 See Comparison
NZ_CP051309.1 See Comparison
NZ_CP120672.1 See Comparison
CP074326.1 See Comparison
CP082438.1 See Comparison
NZ_CP100730.1 See Comparison
NZ_CP100672.1 See Comparison
NZ_CP012834.1 See Comparison
CP149524.1 See Comparison
NZ_CP045512.1 See Comparison
NZ_CP045463.1 See Comparison
NZ_CP051309.1 See Comparison
NZ_CP100730.1 See Comparison
NZ_CP100672.1 See Comparison
CP074326.1 See Comparison
NZ_CP012834.1 See Comparison
NZ_CP051334.1 See Comparison
NZ_CP120672.1 See Comparison
CP082438.1 See Comparison
CP149524.1 See Comparison


Identical Plasmids

100% Sequence Identity


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore