Plasmid CP082438.1

Sequence

Nucleotide Information

Accession CP082438.1
Description Salmonella enterica subsp. enterica serovar Montevideo strain FSIS1608368 plasmid pF18S025-2, complete sequence
Source insd
Topology circular
Length 48618 bp
GC Content 0.44 %
Created at NCBI Sept. 2, 2021



Assembly

Genome Data Information

Accession GCA_009035925.2
Assembly Coverage 881


Biosample

Curated Collection Information
Accession 6015784

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,WI
Original Query Type name
Coordinates (Lat/Lon) 44.43/-89.69
Address USA,WI

ECOSYSTEM
Original Query animal-cattle-steer
Classification host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP051334.1 See Comparison
NZ_CP051309.1 See Comparison
NZ_CP120672.1 See Comparison
NZ_CP100730.1 See Comparison
NZ_CP100712.1 See Comparison
NZ_CP100672.1 See Comparison
CP074326.1 See Comparison
NZ_CP045512.1 See Comparison
NZ_CP012834.1 See Comparison
CP149524.1 See Comparison
NZ_CP045463.1 See Comparison
NZ_CP012834.1 See Comparison
NZ_CP051334.1 See Comparison
NZ_CP051309.1 See Comparison
NZ_CP120672.1 See Comparison
CP074326.1 See Comparison
NZ_CP100730.1 See Comparison
NZ_CP100712.1 See Comparison
NZ_CP100672.1 See Comparison
CP149524.1 See Comparison
NZ_CP012834.1 See Comparison
NZ_CP045512.1 See Comparison
NZ_CP045463.1 See Comparison
NZ_CP120672.1 See Comparison
NZ_CP100712.1 See Comparison
NZ_CP100672.1 See Comparison
CP074326.1 See Comparison
NZ_CP051334.1 See Comparison
NZ_CP051309.1 See Comparison
NZ_CP100730.1 See Comparison
CP149524.1 See Comparison
NZ_CP051334.1 See Comparison
NZ_CP045512.1 See Comparison
NZ_CP045463.1 See Comparison
NZ_CP051334.1 See Comparison
NZ_CP051309.1 See Comparison
NZ_CP012834.1 See Comparison
CP149524.1 See Comparison
NZ_CP045512.1 See Comparison
NZ_CP045463.1 See Comparison
NZ_CP120672.1 See Comparison
NZ_CP100730.1 See Comparison
NZ_CP100712.1 See Comparison
NZ_CP100672.1 See Comparison
CP074326.1 See Comparison
NZ_CP012834.1 See Comparison
NZ_CP120672.1 See Comparison
NZ_CP100730.1 See Comparison
NZ_CP100712.1 See Comparison
NZ_CP100672.1 See Comparison
NZ_CP051309.1 See Comparison
CP082438.1 See Comparison
CP074326.1 See Comparison
NZ_CP100730.1 See Comparison
CP149524.1 See Comparison
NZ_CP045512.1 See Comparison
NZ_CP045463.1 See Comparison
NZ_CP051334.1 See Comparison
NZ_CP051309.1 See Comparison
NZ_CP120672.1 See Comparison
NZ_CP100712.1 See Comparison
NZ_CP100672.1 See Comparison
NZ_CP012834.1 See Comparison
CP074326.1 See Comparison
CP149524.1 See Comparison
NZ_CP045512.1 See Comparison
NZ_CP045463.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore