Plasmid NZ_CP012834.1

Sequence

Nucleotide Information

Accession NZ_CP012834.1
Description Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001588 plasmid pCFSAN001588_001, complete sequence
Source refseq
Topology circular
Length 53952 bp
GC Content 0.45 %
Created at NCBI Jan. 27, 2016



Assembly

Genome Data Information

Accession GCF_000505365.2
Assembly Coverage 126


Biosample

Curated Collection Information
Accession 2383555

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,PA
Original Query Type name
Coordinates (Lat/Lon) 40.97/-77.73
Address USA,PA

ECOSYSTEM
Original Query Bos taurus,animal,feces dairy cow (Bos taurus)
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP149524.1 See Comparison
NZ_CP045512.1 See Comparison
NZ_CP045463.1 See Comparison
CP082438.1 See Comparison
NZ_CP100730.1 See Comparison
NZ_CP100712.1 See Comparison
NZ_CP100672.1 See Comparison
NZ_CP051334.1 See Comparison
NZ_CP051309.1 See Comparison
NZ_CP120672.1 See Comparison
CP149524.1 See Comparison
CP074326.1 See Comparison
NZ_CP045512.1 See Comparison
NZ_CP045463.1 See Comparison
CP074326.1 See Comparison
NZ_CP051334.1 See Comparison
NZ_CP051309.1 See Comparison
NZ_CP120672.1 See Comparison
NZ_CP100730.1 See Comparison
NZ_CP100712.1 See Comparison
NZ_CP100672.1 See Comparison
CP082438.1 See Comparison
CP149524.1 See Comparison
NZ_CP012834.1 See Comparison
NZ_CP045512.1 See Comparison
NZ_CP045463.1 See Comparison
NZ_CP120672.1 See Comparison
NZ_CP051309.1 See Comparison
NZ_CP051334.1 See Comparison
CP074326.1 See Comparison
NZ_CP100730.1 See Comparison
NZ_CP100712.1 See Comparison
NZ_CP100672.1 See Comparison
CP082438.1 See Comparison
CP149524.1 See Comparison
NZ_CP045512.1 See Comparison
NZ_CP045463.1 See Comparison
NZ_CP100730.1 See Comparison
NZ_CP051309.1 See Comparison
NZ_CP051334.1 See Comparison
NZ_CP120672.1 See Comparison
NZ_CP100712.1 See Comparison
NZ_CP100672.1 See Comparison
NZ_CP045512.1 See Comparison
CP074326.1 See Comparison
CP149524.1 See Comparison
CP082438.1 See Comparison
NZ_CP045463.1 See Comparison
NZ_CP051309.1 See Comparison
NZ_CP051334.1 See Comparison
NZ_CP100730.1 See Comparison
NZ_CP120672.1 See Comparison
NZ_CP100712.1 See Comparison
NZ_CP100672.1 See Comparison
NZ_CP051334.1 See Comparison
CP082438.1 See Comparison
CP074326.1 See Comparison
CP149524.1 See Comparison
NZ_CP045512.1 See Comparison
NZ_CP045463.1 See Comparison
NZ_CP120672.1 See Comparison
NZ_CP051309.1 See Comparison
NZ_CP100730.1 See Comparison
NZ_CP100712.1 See Comparison
NZ_CP100672.1 See Comparison
CP082438.1 See Comparison
CP074326.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore