Plasmid NZ_CP100672.1

Sequence

Nucleotide Information

Accession NZ_CP100672.1
Description Salmonella enterica subsp. enterica serovar Mbandaka strain R17.0904 plasmid pR17.0904_49k, complete sequence
Source refseq
Topology circular
Length 48530 bp
GC Content 0.44 %
Created at NCBI July 15, 2022



Assembly

Genome Data Information

Accession GCF_024266165.1
Assembly Coverage 196


Biosample

Curated Collection Information
Accession 29431219

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Taiwan,Chiayi County
Original Query Type name
Coordinates (Lat/Lon) 23.46/120.29
Address Taiwan,Chiayi County

ECOSYSTEM
Original Query Homo sapiens,stool
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 85
Host-associated Sex male

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP149524.1 See Comparison
NZ_CP045512.1 See Comparison
NZ_CP045463.1 See Comparison
NZ_CP051334.1 See Comparison
NZ_CP051309.1 See Comparison
NZ_CP120672.1 See Comparison
NZ_CP100730.1 See Comparison
NZ_CP100712.1 See Comparison
CP074326.1 See Comparison
CP082438.1 See Comparison
CP149524.1 See Comparison
NZ_CP012834.1 See Comparison
NZ_CP120672.1 See Comparison
NZ_CP045512.1 See Comparison
NZ_CP045463.1 See Comparison
NZ_CP051334.1 See Comparison
NZ_CP051309.1 See Comparison
CP074326.1 See Comparison
NZ_CP100730.1 See Comparison
NZ_CP100712.1 See Comparison
CP082438.1 See Comparison
NZ_CP012834.1 See Comparison
CP149524.1 See Comparison
NZ_CP045512.1 See Comparison
NZ_CP045463.1 See Comparison
NZ_CP051334.1 See Comparison
CP149524.1 See Comparison
NZ_CP100730.1 See Comparison
NZ_CP100712.1 See Comparison
CP082438.1 See Comparison
NZ_CP012834.1 See Comparison
NZ_CP051309.1 See Comparison
NZ_CP120672.1 See Comparison
CP074326.1 See Comparison
NZ_CP100730.1 See Comparison
NZ_CP045512.1 See Comparison
NZ_CP045463.1 See Comparison
NZ_CP051334.1 See Comparison
NZ_CP051309.1 See Comparison
NZ_CP120672.1 See Comparison
NZ_CP100712.1 See Comparison
CP082438.1 See Comparison
CP149524.1 See Comparison
CP074326.1 See Comparison
NZ_CP012834.1 See Comparison
NZ_CP045512.1 See Comparison
NZ_CP045463.1 See Comparison
NZ_CP051334.1 See Comparison
NZ_CP051309.1 See Comparison
NZ_CP120672.1 See Comparison
CP082438.1 See Comparison
NZ_CP100730.1 See Comparison
NZ_CP100712.1 See Comparison
NZ_CP012834.1 See Comparison
CP074326.1 See Comparison
NZ_CP045512.1 See Comparison
CP149524.1 See Comparison
NZ_CP045463.1 See Comparison
NZ_CP120672.1 See Comparison
NZ_CP051334.1 See Comparison
NZ_CP051309.1 See Comparison
CP074326.1 See Comparison
NZ_CP100730.1 See Comparison
NZ_CP100712.1 See Comparison
NZ_CP100672.1 See Comparison
CP082438.1 See Comparison
NZ_CP012834.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore