Plasmid NZ_CP098208.1

Sequence

Nucleotide Information

Accession NZ_CP098208.1
Description Escherichia coli strain Z0117EC0054 plasmid pZ0117ECO054-2, complete sequence
Source refseq
Topology circular
Length 131380 bp
GC Content 0.49 %
Created at NCBI June 9, 2022



Assembly

Genome Data Information

Accession GCF_023658305.1
Assembly Coverage 126


Biosample

Curated Collection Information

Accession 28703748

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query South Korea
Original Query Type name
Coordinates (Lat/Lon) 36.56/127.94
Address South Korea

ECOSYSTEM
Original Query Canis lupus familiaris,Rectal swab
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Canis lupus (9615)

DISEASE
Original Query None
DOID/SYMP

Visualization


Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP088741.1 See Comparison
CP088425.1 See Comparison
NC_011747.1 See Comparison
NZ_CP020546.1 See Comparison
NZ_CP033091.2 See Comparison
NZ_CP026854.1 See Comparison
NZ_CP069998.1 See Comparison
NZ_CP082086.1 See Comparison
CP121348.1 See Comparison
NZ_OP331339.1 See Comparison
NZ_CP069936.1 See Comparison
NZ_CP026854.1 See Comparison
NZ_MT263755.1 See Comparison
CP088741.1 See Comparison
CP088425.1 See Comparison
NC_011747.1 See Comparison
NZ_CP020546.1 See Comparison
NZ_CP033091.2 See Comparison
CP121348.1 See Comparison
NZ_CP082086.1 See Comparison
NZ_OP331339.1 See Comparison
NZ_MT263755.1 See Comparison
NZ_CP069998.1 See Comparison
NZ_CP069936.1 See Comparison
NZ_CP020546.1 See Comparison
CP088741.1 See Comparison
CP088425.1 See Comparison
NC_011747.1 See Comparison
NZ_MT263755.1 See Comparison
CP121348.1 See Comparison
NZ_CP033091.2 See Comparison
NZ_CP026854.1 See Comparison
NZ_CP082086.1 See Comparison
NZ_OP331339.1 See Comparison
NZ_CP069998.1 See Comparison
NZ_CP069936.1 See Comparison
NZ_CP033091.2 See Comparison
CP088741.1 See Comparison
CP088425.1 See Comparison
NC_011747.1 See Comparison
NZ_CP020546.1 See Comparison
CP121348.1 See Comparison
NZ_CP026854.1 See Comparison
NZ_CP082086.1 See Comparison
NZ_CP098208.1 See Comparison
NZ_OP331339.1 See Comparison
NZ_CP069998.1 See Comparison
NZ_CP069936.1 See Comparison
NZ_MT263755.1 See Comparison
CP088741.1 See Comparison
CP088425.1 See Comparison
CP121348.1 See Comparison
NZ_CP020546.1 See Comparison
NZ_CP033091.2 See Comparison
NZ_CP026854.1 See Comparison
NZ_CP082086.1 See Comparison
NC_011747.1 See Comparison
NZ_CP069998.1 See Comparison
NZ_OP331339.1 See Comparison
NZ_CP069936.1 See Comparison
NZ_MT263755.1 See Comparison
CP088741.1 See Comparison
CP088425.1 See Comparison
NC_011747.1 See Comparison
NZ_CP020546.1 See Comparison
NZ_CP033091.2 See Comparison
NZ_OP331339.1 See Comparison
CP121348.1 See Comparison
NZ_CP026854.1 See Comparison
NZ_CP082086.1 See Comparison
NZ_CP069998.1 See Comparison
NZ_CP069936.1 See Comparison
NC_011747.1 See Comparison
NZ_MT263755.1 See Comparison
CP088741.1 See Comparison
CP088425.1 See Comparison
NZ_CP020546.1 See Comparison
NZ_CP033091.2 See Comparison
NZ_CP026854.1 See Comparison
CP121348.1 See Comparison
NZ_CP082086.1 See Comparison
NZ_MT263755.1 See Comparison
NZ_OP331339.1 See Comparison
NZ_CP069998.1 See Comparison
NZ_CP069936.1 See Comparison


Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2