Plasmid NZ_CP020546.1

Sequence

Nucleotide Information

Accession NZ_CP020546.1
Description Escherichia coli strain ZJ3920 plasmid pZJ3920-1, complete sequence
Source refseq
Topology circular
Length 133639 bp
GC Content 0.49 %
Created at NCBI Aug. 25, 2019



Assembly

Genome Data Information

Accession GCF_003076395.1
Assembly Coverage 70


Biosample

Curated Collection Information
Accession 6649969

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 30.3N;120.2E
Original Query Type coordinates
Coordinates (Lat/Lon) 30.30/120.20
Address 杭州濮家小学教育集团(笕新校区), 全福桥路, 池塘庙, Jianqiao, Shangcheng District, Hangzhou City, Zhejiang, 310017, China

ECOSYSTEM
Original Query Homo sapiens,bile
Classification host_associated,liver
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP069998.1 See Comparison
NZ_MT263755.1 See Comparison
CP088741.1 See Comparison
NZ_CP098208.1 See Comparison
NZ_OP331339.1 See Comparison
CP088425.1 See Comparison
NZ_CP020546.1 See Comparison
NZ_CP033091.2 See Comparison
NC_011747.1 See Comparison
NZ_CP026854.1 See Comparison
NZ_CP082086.1 See Comparison
CP121348.1 See Comparison
NZ_CP098208.1 See Comparison
NZ_CP069998.1 See Comparison
NZ_MT263755.1 See Comparison
NZ_OP331339.1 See Comparison
CP088741.1 See Comparison
CP088425.1 See Comparison
NZ_CP033091.2 See Comparison
NZ_CP082086.1 See Comparison
NC_011747.1 See Comparison
NZ_CP026854.1 See Comparison
CP121348.1 See Comparison
NZ_CP069998.1 See Comparison
NZ_MT263755.1 See Comparison
NC_011747.1 See Comparison
NZ_CP098208.1 See Comparison
CP088741.1 See Comparison
CP088425.1 See Comparison
NZ_CP026854.1 See Comparison
NZ_CP033091.2 See Comparison
NZ_CP082086.1 See Comparison
CP121348.1 See Comparison
NZ_CP069998.1 See Comparison
NZ_OP331339.1 See Comparison
NZ_MT263755.1 See Comparison
NC_011747.1 See Comparison
CP088741.1 See Comparison
CP088425.1 See Comparison
NZ_CP098208.1 See Comparison
NZ_CP026854.1 See Comparison
NZ_CP033091.2 See Comparison
NZ_OP331339.1 See Comparison
NZ_CP082086.1 See Comparison
CP121348.1 See Comparison
NZ_CP069998.1 See Comparison
NZ_MT263755.1 See Comparison
CP088741.1 See Comparison
NZ_CP098208.1 See Comparison
CP088425.1 See Comparison
NZ_CP033091.2 See Comparison
NC_011747.1 See Comparison
NZ_CP082086.1 See Comparison
NZ_CP026854.1 See Comparison
NZ_CP098208.1 See Comparison
CP121348.1 See Comparison
NZ_OP331339.1 See Comparison
NZ_MT263755.1 See Comparison
NZ_CP069998.1 See Comparison
NZ_CP026854.1 See Comparison
CP088741.1 See Comparison
CP088425.1 See Comparison
NC_011747.1 See Comparison
NZ_CP033091.2 See Comparison
NZ_OP331339.1 See Comparison
NZ_CP082086.1 See Comparison
CP121348.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore