Plasmid NZ_CP026854.1

Sequence

Nucleotide Information

Accession NZ_CP026854.1
Description Escherichia coli strain MS7163 plasmid pMS7163A, complete sequence
Source refseq
Topology circular
Length 133843 bp
GC Content 0.49 %
Created at NCBI March 29, 2018



Assembly

Genome Data Information

Accession GCF_003020885.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 8469740

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Slovakia
Original Query Type name
Coordinates (Lat/Lon) 48.74/19.45
Address Slovakia

ECOSYSTEM
Original Query Homo sapiens,whole organism,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP098208.1 See Comparison
CP088741.1 See Comparison
CP088425.1 See Comparison
NZ_CP020546.1 See Comparison
NC_011747.1 See Comparison
NZ_CP033091.2 See Comparison
NZ_CP082086.1 See Comparison
NZ_OP331339.1 See Comparison
NZ_CP098208.1 See Comparison
NZ_MT263755.1 See Comparison
NZ_CP033091.2 See Comparison
CP088741.1 See Comparison
NZ_CP020546.1 See Comparison
NZ_CP033091.2 See Comparison
NZ_OP331339.1 See Comparison
NZ_MT263755.1 See Comparison
NC_011747.1 See Comparison
NZ_CP020546.1 See Comparison
CP088425.1 See Comparison
NC_011747.1 See Comparison
NZ_CP082086.1 See Comparison
NZ_CP098208.1 See Comparison
CP088741.1 See Comparison
CP088425.1 See Comparison
NZ_CP026854.1 See Comparison
NZ_MT263755.1 See Comparison
NZ_CP082086.1 See Comparison
NZ_OP331339.1 See Comparison
NZ_MT263755.1 See Comparison
NZ_CP098208.1 See Comparison
CP088741.1 See Comparison
CP088425.1 See Comparison
NC_011747.1 See Comparison
NZ_CP020546.1 See Comparison
NZ_CP033091.2 See Comparison
NZ_CP082086.1 See Comparison
NZ_OP331339.1 See Comparison
NZ_CP098208.1 See Comparison
CP088741.1 See Comparison
CP088425.1 See Comparison
NZ_OP331339.1 See Comparison
NZ_CP082086.1 See Comparison
NC_011747.1 See Comparison
NZ_CP020546.1 See Comparison
NZ_CP033091.2 See Comparison
NZ_CP033091.2 See Comparison
NZ_CP098208.1 See Comparison
NZ_MT263755.1 See Comparison
CP088741.1 See Comparison
CP088425.1 See Comparison
NC_011747.1 See Comparison
NZ_CP020546.1 See Comparison
NZ_CP082086.1 See Comparison
NZ_MT263755.1 See Comparison
NZ_OP331339.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore