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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP096215.1
Sequence
Nucleotide Information
Accession
NZ_CP096215.1
Description
Enterococcus faecium strain UCH1 plasmid pUCH1-4, complete sequence
Source
refseq
Topology
circular
Length
6173 bp
GC Content
0.36 %
Created at NCBI
May 3, 2022
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Enterococcus faecium (1352)
Lineage
Superkingdom
Bacteria (2)
Phylum
Bacillota (1239)
Class
Bacilli (91061)
Order
Lactobacillales (186826)
Family
Enterococcaceae (81852)
Genus
Enterococcus (1350)
Species
Enterococcus_faecium (1352)
Strain
Assembly
Genome Data Information
Accession
GCF_023204955.1
Assembly Coverage
225.8
Biosample
Curated Collection Information
Accession
27725314
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
39.742630N;104.842026W
Original Query Type
coordinates
Coordinates (Lat/Lon)
39.74/-104.84
Address
Anschutz Inpatient Pavilion (University Hospital), 12605, East 16th Avenue, Aurora, Adams County, Colorado, 80045, United States
ECOSYSTEM
Original Query
Homo sapiens,blood
Classification
blood,circulatory_system,host_associated
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
Enterococcus infection
DOID/SYMP
Bacterial infectious disease
(
DOID:104
)
A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
Has_material_basis_in: ['bacteria']
Visualization
PNG
JSON
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Plasmids from same Biosample
NZ_CP096218.1
NZ_CP096217.1
NZ_CP096216.1
NZ_CP096214.1
NZ_CP096213.1
NZ_CP096212.1
Similar Plasmids
based on Mash distance
NZ_OU015951.1
See Comparison
NZ_OU016042.1
See Comparison
NZ_OU016032.1
See Comparison
NZ_CP072573.1
See Comparison
NZ_CP072583.1
See Comparison
NZ_CP072590.1
See Comparison
NZ_CP071925.1
See Comparison
NZ_CP044269.1
See Comparison
NZ_CP041274.1
See Comparison
NZ_CP040743.1
See Comparison
NZ_LR135313.1
See Comparison
NZ_LR135493.1
See Comparison
NZ_LR135328.1
See Comparison
NZ_LR135321.1
See Comparison
NZ_LR135423.1
See Comparison
NZ_CP152092.1
See Comparison
NZ_CP131866.1
See Comparison
CP086648.1
See Comparison
NZ_CP041266.2
See Comparison
AP027236.1
See Comparison
AP027224.1
See Comparison
AP031282.1
See Comparison
NZ_KY595970.1
See Comparison
NZ_CP059778.1
See Comparison
NZ_CP064348.1
See Comparison
NZ_CP044323.1
See Comparison
NZ_CP046079.1
See Comparison
NZ_CP046170.1
See Comparison
NZ_CP066658.1
See Comparison
NZ_CP066672.1
See Comparison
NZ_CP066407.1
See Comparison
NZ_CP066393.1
See Comparison
NZ_CP059760.1
See Comparison
NZ_CP059827.1
See Comparison
NZ_CP060864.1
See Comparison
NZ_OP378690.1
See Comparison
NZ_CP119154.1
See Comparison
NZ_CP059789.1
See Comparison
NZ_CP059810.1
See Comparison
NZ_CP085901.1
See Comparison
AP026646.1
See Comparison
NZ_CP093946.1
See Comparison
NZ_CP093950.1
See Comparison
NZ_CP114622.1
See Comparison
CP063630.1
See Comparison
CP063567.1
See Comparison
CP063644.1
See Comparison
CP063623.1
See Comparison
CP063615.1
See Comparison
NZ_CP085913.1
See Comparison
NZ_CP071925.1
See Comparison
NZ_OU015951.1
See Comparison
NZ_OU016042.1
See Comparison
NZ_OU016032.1
See Comparison
NZ_CP072573.1
See Comparison
NZ_CP072583.1
See Comparison
NZ_CP072590.1
See Comparison
NZ_CP041274.1
See Comparison
NZ_CP044269.1
See Comparison
NZ_CP040743.1
See Comparison
NZ_LR135328.1
See Comparison
NZ_LR135321.1
See Comparison
NZ_LR135423.1
See Comparison
NZ_LR135313.1
See Comparison
NZ_LR135493.1
See Comparison
CP086648.1
See Comparison
NZ_CP152092.1
See Comparison
NZ_CP131866.1
See Comparison
NZ_KY595970.1
See Comparison
AP027236.1
See Comparison
AP027224.1
See Comparison
AP031282.1
See Comparison
NZ_CP046079.1
See Comparison
NZ_CP041266.2
See Comparison
NZ_CP059778.1
See Comparison
NZ_CP046170.1
See Comparison
NZ_CP066658.1
See Comparison
NZ_CP066672.1
See Comparison
NZ_CP066407.1
See Comparison
NZ_CP066393.1
See Comparison
NZ_CP064348.1
See Comparison
NZ_CP060864.1
See Comparison
NZ_CP044323.1
See Comparison
NZ_CP059827.1
See Comparison
NZ_CP119154.1
See Comparison
NZ_CP059789.1
See Comparison
NZ_CP059810.1
See Comparison
NZ_CP059760.1
See Comparison
CP063630.1
See Comparison
NZ_OP378690.1
See Comparison
NZ_CP114622.1
See Comparison
NZ_CP096215.1
See Comparison
AP026646.1
See Comparison
CP063567.1
See Comparison
CP063644.1
See Comparison
CP063623.1
See Comparison
CP063615.1
See Comparison
NZ_CP085913.1
See Comparison
NZ_CP093946.1
See Comparison
NZ_CP093950.1
See Comparison
NZ_CP071925.1
See Comparison
NZ_OU015951.1
See Comparison
NZ_CP072573.1
See Comparison
NZ_CP072583.1
See Comparison
NZ_CP072590.1
See Comparison
NZ_CP085901.1
See Comparison
NZ_OU016042.1
See Comparison
NZ_OU016032.1
See Comparison
NZ_CP046079.1
See Comparison
NZ_CP044269.1
See Comparison
NZ_CP040743.1
See Comparison
NZ_LR135313.1
See Comparison
NZ_LR135423.1
See Comparison
NZ_CP131866.1
See Comparison
NZ_CP041266.2
See Comparison
NZ_CP041274.1
See Comparison
NZ_LR135493.1
See Comparison
NZ_LR135328.1
See Comparison
NZ_LR135321.1
See Comparison
NZ_CP152092.1
See Comparison
CP086648.1
See Comparison
AP027236.1
See Comparison
AP027224.1
See Comparison
AP031282.1
See Comparison
NZ_KY595970.1
See Comparison
NZ_CP046170.1
See Comparison
NZ_CP066407.1
See Comparison
NZ_CP066393.1
See Comparison
NZ_CP119154.1
See Comparison
NZ_CP066658.1
See Comparison
NZ_CP066672.1
See Comparison
NZ_CP064348.1
See Comparison
NZ_CP059789.1
See Comparison
NZ_CP059810.1
See Comparison
NZ_CP059760.1
See Comparison
NZ_CP059827.1
See Comparison
NZ_CP059778.1
See Comparison
NZ_CP060864.1
See Comparison
NZ_CP044323.1
See Comparison
NZ_CP114622.1
See Comparison
NZ_OP378690.1
See Comparison
NZ_CP093946.1
See Comparison
CP063630.1
See Comparison
CP063567.1
See Comparison
CP063644.1
See Comparison
CP063623.1
See Comparison
CP063615.1
See Comparison
AP026646.1
See Comparison
NZ_CP093950.1
See Comparison
NZ_OU016042.1
See Comparison
NZ_CP085901.1
See Comparison
NZ_CP085913.1
See Comparison
NZ_OU016032.1
See Comparison
NZ_CP044269.1
See Comparison
NZ_OU015951.1
See Comparison
NZ_CP072573.1
See Comparison
NZ_CP072583.1
See Comparison
NZ_CP072590.1
See Comparison
NZ_CP071925.1
See Comparison
NZ_LR135313.1
See Comparison
NZ_CP041274.1
See Comparison
NZ_CP040743.1
See Comparison
NZ_LR135493.1
See Comparison
NZ_LR135328.1
See Comparison
NZ_LR135321.1
See Comparison
NZ_CP060864.1
See Comparison
NZ_CP131866.1
See Comparison
NZ_CP041266.2
See Comparison
NZ_CP046079.1
See Comparison
NZ_CP066658.1
See Comparison
NZ_CP066672.1
See Comparison
NZ_CP066407.1
See Comparison
NZ_CP064348.1
See Comparison
NZ_LR135423.1
See Comparison
NZ_CP152092.1
See Comparison
CP086648.1
See Comparison
AP027236.1
See Comparison
AP027224.1
See Comparison
AP031282.1
See Comparison
NZ_KY595970.1
See Comparison
NZ_CP046170.1
See Comparison
NZ_CP066393.1
See Comparison
NZ_CP044323.1
See Comparison
NZ_OP378690.1
See Comparison
NZ_CP059778.1
See Comparison
NZ_CP119154.1
See Comparison
NZ_CP059789.1
See Comparison
NZ_CP059810.1
See Comparison
NZ_CP059760.1
See Comparison
NZ_CP059827.1
See Comparison
NZ_OU015951.1
See Comparison
AP026646.1
See Comparison
NZ_CP093946.1
See Comparison
NZ_CP093950.1
See Comparison
NZ_CP085901.1
See Comparison
NZ_CP085913.1
See Comparison
NZ_CP114622.1
See Comparison
CP063630.1
See Comparison
CP063567.1
See Comparison
CP063644.1
See Comparison
CP063623.1
See Comparison
CP063615.1
See Comparison
NZ_OU016042.1
See Comparison
NZ_OU016032.1
See Comparison
NZ_CP072573.1
See Comparison
NZ_CP072583.1
See Comparison
NZ_CP072590.1
See Comparison
NZ_CP044269.1
See Comparison
NZ_CP071925.1
See Comparison
NZ_LR135493.1
See Comparison
NZ_CP041274.1
See Comparison
NZ_CP040743.1
See Comparison
NZ_LR135328.1
See Comparison
NZ_LR135321.1
See Comparison
NZ_CP041266.2
See Comparison
NZ_LR135313.1
See Comparison
NZ_LR135423.1
See Comparison
NZ_CP152092.1
See Comparison
NZ_CP131866.1
See Comparison
CP086648.1
See Comparison
AP027236.1
See Comparison
AP027224.1
See Comparison
AP031282.1
See Comparison
NZ_KY595970.1
See Comparison
NZ_CP060864.1
See Comparison
NZ_CP046079.1
See Comparison
NZ_CP066658.1
See Comparison
NZ_CP066672.1
See Comparison
NZ_CP066407.1
See Comparison
NZ_CP064348.1
See Comparison
NZ_CP046170.1
See Comparison
NZ_CP066393.1
See Comparison
NZ_CP044323.1
See Comparison
NZ_OP378690.1
See Comparison
NZ_CP059778.1
See Comparison
NZ_CP119154.1
See Comparison
NZ_CP059789.1
See Comparison
NZ_CP059810.1
See Comparison
NZ_CP059760.1
See Comparison
NZ_CP059827.1
See Comparison
NZ_OU015951.1
See Comparison
AP026646.1
See Comparison
NZ_CP093946.1
See Comparison
NZ_CP093950.1
See Comparison
NZ_CP085901.1
See Comparison
NZ_CP085913.1
See Comparison
NZ_CP114622.1
See Comparison
CP063630.1
See Comparison
CP063567.1
See Comparison
CP063644.1
See Comparison
CP063623.1
See Comparison
CP063615.1
See Comparison
NZ_OU016042.1
See Comparison
NZ_OU016032.1
See Comparison
NZ_CP072573.1
See Comparison
NZ_CP072583.1
See Comparison
NZ_CP072590.1
See Comparison
NZ_CP044269.1
See Comparison
NZ_CP071925.1
See Comparison
NZ_LR135493.1
See Comparison
NZ_CP041274.1
See Comparison
NZ_CP040743.1
See Comparison
NZ_LR135328.1
See Comparison
NZ_LR135321.1
See Comparison
NZ_CP152092.1
See Comparison
NZ_LR135313.1
See Comparison
NZ_LR135423.1
See Comparison
NZ_CP131866.1
See Comparison
CP086648.1
See Comparison
AP027236.1
See Comparison
AP027224.1
See Comparison
AP031282.1
See Comparison
NZ_KY595970.1
See Comparison
NZ_CP046170.1
See Comparison
NZ_CP046079.1
See Comparison
NZ_CP041266.2
See Comparison
NZ_CP059778.1
See Comparison
NZ_CP060864.1
See Comparison
NZ_CP044323.1
See Comparison
NZ_CP066658.1
See Comparison
NZ_CP066672.1
See Comparison
NZ_CP066407.1
See Comparison
NZ_CP066393.1
See Comparison
NZ_CP064348.1
See Comparison
NZ_CP119154.1
See Comparison
NZ_CP059789.1
See Comparison
NZ_CP059810.1
See Comparison
NZ_CP059760.1
See Comparison
NZ_CP059827.1
See Comparison
NZ_CP114622.1
See Comparison
NZ_OP378690.1
See Comparison
NZ_CP093946.1
See Comparison
AP026646.1
See Comparison
CP063630.1
See Comparison
CP063567.1
See Comparison
CP063644.1
See Comparison
CP063623.1
See Comparison
CP063615.1
See Comparison
NZ_CP093950.1
See Comparison
NZ_CP085913.1
See Comparison
NZ_CP085901.1
See Comparison
Identical Plasmids
100% Sequence Identity
NZ_CP072583.1
Sequence
Accession
:
NZ_CP072583.1
Description
: Enterococcus faecium strain VB12993 plasmid pVB12993_p4, complete sequence
Source
: refseq
Created at NCBI
: April 10, 2021
Host Taxonomy
Assigned Host
:
Enterococcus faecium (1352)
Superkingdom
:
Bacteria (2)
Phylum
:
Bacillota (1239)
Class
:
Bacilli (91061)
Order
:
Lactobacillales (186826)
Family
:
Enterococcaceae (81852)
Genus
:
Enterococcus (1350)
Species
:
Enterococcus_faecium (1352)
Strain
:
Biosample
Accession
:
18533867
GEOGRAPHICAL INFORMATION
Original Query
: 12.9165N;79.1325E
Original Query Type
: coordinates
Address
: NH38, Vellore, Vellore District, Tamil Nadu, 632008, India
Coordinates
(Lat/Lon): 12.92/79.13
ECOSYSTEM
Original Query
: Homo sapiens,blood
Classification
: blood,circulatory_system,host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
DISEASE
Original Query
: Sepsis
DOID/SYMP
:
Disease infectious agent
(
DOID:0050117
)
A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.
Visualization
PNG
JSON
NZ_CP072573.1
Sequence
Accession
:
NZ_CP072573.1
Description
: Enterococcus faecium strain VB3895 plasmid pVB3895_p6, complete sequence
Source
: refseq
Created at NCBI
: April 10, 2021
Host Taxonomy
Assigned Host
:
Enterococcus faecium (1352)
Superkingdom
:
Bacteria (2)
Phylum
:
Bacillota (1239)
Class
:
Bacilli (91061)
Order
:
Lactobacillales (186826)
Family
:
Enterococcaceae (81852)
Genus
:
Enterococcus (1350)
Species
:
Enterococcus_faecium (1352)
Strain
:
Biosample
Accession
:
18533866
GEOGRAPHICAL INFORMATION
Original Query
: 12.9165N;79.1325E
Original Query Type
: coordinates
Address
: NH38, Vellore, Vellore District, Tamil Nadu, 632008, India
Coordinates
(Lat/Lon): 12.92/79.13
ECOSYSTEM
Original Query
: Homo sapiens,blood
Classification
: blood,circulatory_system,host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
DISEASE
Original Query
: Sepsis
DOID/SYMP
:
Disease infectious agent
(
DOID:0050117
)
A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.
Visualization
PNG
JSON
NZ_CP072590.1
Sequence
Accession
:
NZ_CP072590.1
Description
: Enterococcus faecium strain VB976 plasmid pVB976_p4, complete sequence
Source
: refseq
Created at NCBI
: April 10, 2021
Host Taxonomy
Assigned Host
:
Enterococcus faecium (1352)
Superkingdom
:
Bacteria (2)
Phylum
:
Bacillota (1239)
Class
:
Bacilli (91061)
Order
:
Lactobacillales (186826)
Family
:
Enterococcaceae (81852)
Genus
:
Enterococcus (1350)
Species
:
Enterococcus_faecium (1352)
Strain
:
Biosample
Accession
:
18533868
GEOGRAPHICAL INFORMATION
Original Query
: 12.9165N;79.1325E
Original Query Type
: coordinates
Address
: NH38, Vellore, Vellore District, Tamil Nadu, 632008, India
Coordinates
(Lat/Lon): 12.92/79.13
ECOSYSTEM
Original Query
: Homo sapiens,blood
Classification
: blood,circulatory_system,host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
DISEASE
Original Query
: Sepsis
DOID/SYMP
:
Disease infectious agent
(
DOID:0050117
)
A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.
Visualization
PNG
JSON
NZ_CP071925.1
Sequence
Accession
:
NZ_CP071925.1
Description
: Enterococcus faecium strain VRE3355 plasmid unnamed6, complete sequence
Source
: refseq
Created at NCBI
: March 26, 2021
Host Taxonomy
Assigned Host
:
Enterococcus faecium (1352)
Superkingdom
:
Bacteria (2)
Phylum
:
Bacillota (1239)
Class
:
Bacilli (91061)
Order
:
Lactobacillales (186826)
Family
:
Enterococcaceae (81852)
Genus
:
Enterococcus (1350)
Species
:
Enterococcus_faecium (1352)
Strain
:
Biosample
Accession
:
15566637
GEOGRAPHICAL INFORMATION
Original Query
: 37.81S;144.96E
Original Query Type
: coordinates
Address
: Argus Centre, 300, La Trobe Street, Melbourne, City of Melbourne, Victoria, 3000, Australia
Coordinates
(Lat/Lon): -37.81/144.96
ECOSYSTEM
Original Query
: Homo sapiens,rectal swab
Classification
: gastrointestinal_system,host_associated,rectal
Host-associated Taxon
:
Homo sapiens (
9606
)
Visualization
PNG
JSON
NZ_CP064348.1
Sequence
Accession
:
NZ_CP064348.1
Description
: Enterococcus faecium strain VRE3363 plasmid unnamed5, complete sequence
Source
: refseq
Created at NCBI
: Nov. 16, 2020
Host Taxonomy
Assigned Host
:
Enterococcus faecium (1352)
Superkingdom
:
Bacteria (2)
Phylum
:
Bacillota (1239)
Class
:
Bacilli (91061)
Order
:
Lactobacillales (186826)
Family
:
Enterococcaceae (81852)
Genus
:
Enterococcus (1350)
Species
:
Enterococcus_faecium (1352)
Strain
:
Biosample
Accession
:
15566645
GEOGRAPHICAL INFORMATION
Original Query
: 37.81S;144.96E
Original Query Type
: coordinates
Address
: Argus Centre, 300, La Trobe Street, Melbourne, City of Melbourne, Victoria, 3000, Australia
Coordinates
(Lat/Lon): -37.81/144.96
ECOSYSTEM
Original Query
: Homo sapiens,rectal swab
Classification
: gastrointestinal_system,host_associated,rectal
Host-associated Taxon
:
Homo sapiens (
9606
)
Visualization
PNG
JSON
NZ_CP041274.1
Sequence
Accession
:
NZ_CP041274.1
Description
: Enterococcus faecium strain VVEswe-S plasmid pVVEswe-S5, complete sequence
Source
: refseq
Created at NCBI
: Aug. 12, 2019
Host Taxonomy
Assigned Host
:
Enterococcus faecium (1352)
Superkingdom
:
Bacteria (2)
Phylum
:
Bacillota (1239)
Class
:
Bacilli (91061)
Order
:
Lactobacillales (186826)
Family
:
Enterococcaceae (81852)
Genus
:
Enterococcus (1350)
Species
:
Enterococcus_faecium (1352)
Strain
:
Biosample
Accession
:
12138986
GEOGRAPHICAL INFORMATION
Original Query
: 56.6744N;12.8578E
Original Query Type
: coordinates
Address
: Stora torg, Östra Förstaden, Halmstad, Halmstads kommun, Halland County, 302 46, Sweden
Coordinates
(Lat/Lon): 56.67/12.86
ECOSYSTEM
Original Query
: Homo sapiens,feces
Classification
: fecal,gastrointestinal_system,host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
DISEASE
Original Query
: Liver failure
DOID/SYMP
:
Liver disease
(
DOID:409
)
None
Visualization
PNG
JSON
NZ_CP044323.1
Sequence
Accession
:
NZ_CP044323.1
Description
: Enterococcus faecium strain 15-307-1 plasmid p15-307-1_07, complete sequence
Source
: refseq
Created at NCBI
: Sept. 25, 2019
Host Taxonomy
Assigned Host
:
Enterococcus faecium (1352)
Superkingdom
:
Bacteria (2)
Phylum
:
Bacillota (1239)
Class
:
Bacilli (91061)
Order
:
Lactobacillales (186826)
Family
:
Enterococcaceae (81852)
Genus
:
Enterococcus (1350)
Species
:
Enterococcus_faecium (1352)
Strain
:
Biosample
Accession
:
8093650
GEOGRAPHICAL INFORMATION
Original Query
: 48.6103N;2.4748E
Original Query Type
: coordinates
Address
: 15, Rue Maurage, Corbeil-Essonnes, Évry, Essonne, Ile-de-France, Metropolitan France, 91100, France
Coordinates
(Lat/Lon): 48.61/2.47
ECOSYSTEM
Original Query
: Homo sapiens,Rectal swab
Classification
: gastrointestinal_system,host_associated,rectal
Host-associated Taxon
:
Homo sapiens (
9606
)
Visualization
PNG
JSON
NZ_CP066407.1
Sequence
Accession
:
NZ_CP066407.1
Description
: Enterococcus faecium strain Dallas 51_4 plasmid p51_4_6kb, complete sequence
Source
: refseq
Created at NCBI
: Dec. 29, 2020
Host Taxonomy
Assigned Host
:
Enterococcus faecium (1352)
Superkingdom
:
Bacteria (2)
Phylum
:
Bacillota (1239)
Class
:
Bacilli (91061)
Order
:
Lactobacillales (186826)
Family
:
Enterococcaceae (81852)
Genus
:
Enterococcus (1350)
Species
:
Enterococcus_faecium (1352)
Strain
:
Biosample
Accession
:
17038075
GEOGRAPHICAL INFORMATION
Original Query
: USA,Dallas
Original Query Type
: name
Address
: USA,Dallas
Coordinates
(Lat/Lon): 32.78/-96.80
ECOSYSTEM
Original Query
: Homo sapiens,cell culture,rectal swab
Classification
: cell_culture,gastrointestinal_system,host_associated,rectal
Host-associated Taxon
:
Homo sapiens (
9606
)
Visualization
PNG
JSON
NZ_CP059827.1
Sequence
Accession
:
NZ_CP059827.1
Description
: Enterococcus faecium strain A15023 plasmid pA15023_P4, complete sequence
Source
: refseq
Created at NCBI
: July 31, 2020
Host Taxonomy
Assigned Host
:
Enterococcus faecium (1352)
Superkingdom
:
Bacteria (2)
Phylum
:
Bacillota (1239)
Class
:
Bacilli (91061)
Order
:
Lactobacillales (186826)
Family
:
Enterococcaceae (81852)
Genus
:
Enterococcus (1350)
Species
:
Enterococcus_faecium (1352)
Strain
:
Biosample
Accession
:
14675383
GEOGRAPHICAL INFORMATION
Original Query
: India,Vellore
Original Query Type
: name
Address
: India,Vellore
Coordinates
(Lat/Lon): 12.79/79.00
ECOSYSTEM
Original Query
: Homo sapiens,blood
Classification
: blood,circulatory_system,host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
DISEASE
Original Query
: Sepsis
DOID/SYMP
:
Disease infectious agent
(
DOID:0050117
)
A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.
Visualization
PNG
JSON
NZ_CP059778.1
Sequence
Accession
:
NZ_CP059778.1
Description
: Enterococcus faecium strain A3895 plasmid pA3895_P6, complete sequence
Source
: refseq
Created at NCBI
: July 31, 2020
Host Taxonomy
Assigned Host
:
Enterococcus faecium (1352)
Superkingdom
:
Bacteria (2)
Phylum
:
Bacillota (1239)
Class
:
Bacilli (91061)
Order
:
Lactobacillales (186826)
Family
:
Enterococcaceae (81852)
Genus
:
Enterococcus (1350)
Species
:
Enterococcus_faecium (1352)
Strain
:
Biosample
Accession
:
14675384
GEOGRAPHICAL INFORMATION
Original Query
: India,Vellore
Original Query Type
: name
Address
: India,Vellore
Coordinates
(Lat/Lon): 12.79/79.00
ECOSYSTEM
Original Query
: Homo sapiens,blood
Classification
: blood,circulatory_system,host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
DISEASE
Original Query
: Sepsis
DOID/SYMP
:
Disease infectious agent
(
DOID:0050117
)
A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.
Visualization
PNG
JSON
NZ_LR135423.1
Sequence
Accession
:
NZ_LR135423.1
Description
: Enterococcus faecium isolate E8440 plasmid 5
Source
: refseq
Created at NCBI
: Jan. 2, 2019
Host Taxonomy
Assigned Host
:
Enterococcus faecium (1352)
Superkingdom
:
Bacteria (2)
Phylum
:
Bacillota (1239)
Class
:
Bacilli (91061)
Order
:
Lactobacillales (186826)
Family
:
Enterococcaceae (81852)
Genus
:
Enterococcus (1350)
Species
:
Enterococcus_faecium (1352)
Strain
:
Biosample
Accession
:
10007677
GEOGRAPHICAL INFORMATION
Original Query
: Netherlands
Original Query Type
: name
Address
: Netherlands
Coordinates
(Lat/Lon): 52.24/5.53
ECOSYSTEM
Original Query
: None
Classification
: None
Host-associated Taxon
:
Visualization
PNG
JSON
NZ_OP378690.1
Sequence
Accession
:
NZ_OP378690.1
Description
: Enterococcus faecium strain VRE33562 plasmid pVRE33562_6, complete sequence
Source
: refseq
Created at NCBI
: Feb. 20, 2023
Host Taxonomy
Assigned Host
:
Enterococcus faecium (1352)
Superkingdom
:
Bacteria (2)
Phylum
:
Bacillota (1239)
Class
:
Bacilli (91061)
Order
:
Lactobacillales (186826)
Family
:
Enterococcaceae (81852)
Genus
:
Enterococcus (1350)
Species
:
Enterococcus_faecium (1352)
Strain
:
CP063615.1
Sequence
Accession
:
CP063615.1
Description
: Enterococcus faecium strain ICU-1-1 plasmid pZA1-1_04, complete sequence
Source
: insd
Created at NCBI
: April 4, 2022
Host Taxonomy
Assigned Host
:
Enterococcus faecium (1352)
Superkingdom
:
Bacteria (2)
Phylum
:
Bacillota (1239)
Class
:
Bacilli (91061)
Order
:
Lactobacillales (186826)
Family
:
Enterococcaceae (81852)
Genus
:
Enterococcus (1350)
Species
:
Enterococcus_faecium (1352)
Strain
:
Biosample
Accession
:
16483154
GEOGRAPHICAL INFORMATION
Original Query
: 53.33N;10.1E
Original Query Type
: coordinates
Address
: Zum Woldberg, Winsen (Luhe), Harburg, Lower Saxony, 21423, Germany
Coordinates
(Lat/Lon): 53.33/10.10
ECOSYSTEM
Original Query
: Homo sapiens,rectal swab
Classification
: gastrointestinal_system,host_associated,rectal
Host-associated Taxon
:
Homo sapiens (
9606
)
DISEASE
Original Query
: cardiovascular disease
DOID/SYMP
:
Cardiovascular system disease
(
DOID:1287
)
A disease of anatomical entity which occurs in the blood, heart, blood vessels or the lymphatic system that passes nutrients (such as amino acids and electrolytes), gases, hormones, blood cells or lymph to and from cells in the body to help fight diseases and help stabilize body temperature and pH to maintain homeostasis.
Visualization
PNG
JSON
CP063630.1
Sequence
Accession
:
CP063630.1
Description
: Enterococcus faecium strain ICU-4-1 plasmid pZA4-1_04, complete sequence
Source
: insd
Created at NCBI
: April 4, 2022
Host Taxonomy
Assigned Host
:
Enterococcus faecium (1352)
Superkingdom
:
Bacteria (2)
Phylum
:
Bacillota (1239)
Class
:
Bacilli (91061)
Order
:
Lactobacillales (186826)
Family
:
Enterococcaceae (81852)
Genus
:
Enterococcus (1350)
Species
:
Enterococcus_faecium (1352)
Strain
:
Biosample
Accession
:
16483152
GEOGRAPHICAL INFORMATION
Original Query
: 53.33N;10.1E
Original Query Type
: coordinates
Address
: Zum Woldberg, Winsen (Luhe), Harburg, Lower Saxony, 21423, Germany
Coordinates
(Lat/Lon): 53.33/10.10
ECOSYSTEM
Original Query
: Homo sapiens,rectal swab
Classification
: gastrointestinal_system,host_associated,rectal
Host-associated Taxon
:
Homo sapiens (
9606
)
DISEASE
Original Query
: cardiovascular disease
DOID/SYMP
:
Cardiovascular system disease
(
DOID:1287
)
A disease of anatomical entity which occurs in the blood, heart, blood vessels or the lymphatic system that passes nutrients (such as amino acids and electrolytes), gases, hormones, blood cells or lymph to and from cells in the body to help fight diseases and help stabilize body temperature and pH to maintain homeostasis.
Visualization
PNG
JSON
CP063644.1
Sequence
Accession
:
CP063644.1
Description
: Enterococcus faecium strain ICU-2-1 plasmid pZA2-1_05, complete sequence
Source
: insd
Created at NCBI
: April 4, 2022
Host Taxonomy
Assigned Host
:
Enterococcus faecium (1352)
Superkingdom
:
Bacteria (2)
Phylum
:
Bacillota (1239)
Class
:
Bacilli (91061)
Order
:
Lactobacillales (186826)
Family
:
Enterococcaceae (81852)
Genus
:
Enterococcus (1350)
Species
:
Enterococcus_faecium (1352)
Strain
:
Biosample
Accession
:
16483150
GEOGRAPHICAL INFORMATION
Original Query
: 53.33N;10.1E
Original Query Type
: coordinates
Address
: Zum Woldberg, Winsen (Luhe), Harburg, Lower Saxony, 21423, Germany
Coordinates
(Lat/Lon): 53.33/10.10
ECOSYSTEM
Original Query
: Homo sapiens,rectal swab
Classification
: gastrointestinal_system,host_associated,rectal
Host-associated Taxon
:
Homo sapiens (
9606
)
DISEASE
Original Query
: cardiovascular disease
DOID/SYMP
:
Cardiovascular system disease
(
DOID:1287
)
A disease of anatomical entity which occurs in the blood, heart, blood vessels or the lymphatic system that passes nutrients (such as amino acids and electrolytes), gases, hormones, blood cells or lymph to and from cells in the body to help fight diseases and help stabilize body temperature and pH to maintain homeostasis.
Visualization
PNG
JSON
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Biosynthetic Gene Clusters
based on ANTISMASH
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore