Plasmid NZ_CP066672.1

Sequence

Nucleotide Information

Accession NZ_CP066672.1
Description Enterococcus faecium strain Dallas 158 plasmid p5, complete sequence
Source refseq
Topology circular
Length 6173 bp
GC Content 0.36 %
Created at NCBI Dec. 30, 2020



Assembly

Genome Data Information

Accession GCF_016415565.1
Assembly Coverage 163


Biosample

Curated Collection Information
Accession 17038107

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,Dallas
Original Query Type name
Coordinates (Lat/Lon) 32.78/-96.80
Address USA,Dallas

ECOSYSTEM
Original Query Homo sapiens,cell culture,rectal swab
Classification cell_culture,gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_OP378690.1 See Comparison
NZ_CP096215.1 See Comparison
CP063630.1 See Comparison
CP063644.1 See Comparison
CP063615.1 See Comparison
NZ_CP072573.1 See Comparison
NZ_CP072583.1 See Comparison
NZ_CP072590.1 See Comparison
NZ_CP041266.2 See Comparison
NZ_CP071925.1 See Comparison
NZ_CP041274.1 See Comparison
NZ_LR135423.1 See Comparison
NZ_KY595970.1 See Comparison
NZ_CP064348.1 See Comparison
NZ_CP066658.1 See Comparison
NZ_CP066407.1 See Comparison
NZ_CP059778.1 See Comparison
NZ_CP059760.1 See Comparison
NZ_CP059827.1 See Comparison
NZ_CP044323.1 See Comparison
CP063630.1 See Comparison
NZ_OP378690.1 See Comparison
NZ_CP096215.1 See Comparison
CP063615.1 See Comparison
CP063644.1 See Comparison
NZ_CP072573.1 See Comparison
NZ_CP072583.1 See Comparison
NZ_CP072590.1 See Comparison
NZ_CP041274.1 See Comparison
NZ_CP071925.1 See Comparison
NZ_KY595970.1 See Comparison
NZ_LR135423.1 See Comparison
NZ_CP041266.2 See Comparison
NZ_CP059778.1 See Comparison
NZ_CP064348.1 See Comparison
NZ_CP044323.1 See Comparison
NZ_CP066658.1 See Comparison
NZ_CP066407.1 See Comparison
NZ_OP378690.1 See Comparison
NZ_CP059760.1 See Comparison
NZ_CP059827.1 See Comparison
CP063630.1 See Comparison
NZ_CP096215.1 See Comparison
CP063644.1 See Comparison
CP063615.1 See Comparison
NZ_CP072573.1 See Comparison
NZ_CP072583.1 See Comparison
NZ_CP072590.1 See Comparison
NZ_LR135423.1 See Comparison
NZ_CP071925.1 See Comparison
NZ_CP041274.1 See Comparison
NZ_CP064348.1 See Comparison
NZ_KY595970.1 See Comparison
NZ_CP066658.1 See Comparison
NZ_CP066407.1 See Comparison
NZ_CP041266.2 See Comparison
NZ_OP378690.1 See Comparison
NZ_CP059778.1 See Comparison
NZ_CP059760.1 See Comparison
NZ_CP059827.1 See Comparison
NZ_CP044323.1 See Comparison
NZ_LR135423.1 See Comparison
NZ_CP071925.1 See Comparison
NZ_CP096215.1 See Comparison
CP063630.1 See Comparison
CP063644.1 See Comparison
CP063615.1 See Comparison
NZ_CP072573.1 See Comparison
NZ_CP072583.1 See Comparison
NZ_CP072590.1 See Comparison
NZ_CP041274.1 See Comparison
NZ_KY595970.1 See Comparison
NZ_CP066658.1 See Comparison
NZ_CP041266.2 See Comparison
NZ_CP066672.1 See Comparison
NZ_CP066407.1 See Comparison
NZ_CP064348.1 See Comparison
NZ_CP059760.1 See Comparison
NZ_CP059778.1 See Comparison
NZ_CP044323.1 See Comparison
NZ_CP059827.1 See Comparison
NZ_OP378690.1 See Comparison
CP063630.1 See Comparison
NZ_CP096215.1 See Comparison
CP063644.1 See Comparison
CP063615.1 See Comparison
NZ_CP041266.2 See Comparison
NZ_CP072573.1 See Comparison
NZ_CP072583.1 See Comparison
NZ_CP072590.1 See Comparison
NZ_KY595970.1 See Comparison
NZ_CP071925.1 See Comparison
NZ_CP041274.1 See Comparison
NZ_LR135423.1 See Comparison
NZ_CP066407.1 See Comparison
NZ_CP066658.1 See Comparison
NZ_CP059778.1 See Comparison
NZ_CP064348.1 See Comparison
NZ_CP044323.1 See Comparison
NZ_OP378690.1 See Comparison
NZ_CP059760.1 See Comparison
NZ_CP059827.1 See Comparison
CP063630.1 See Comparison
NZ_CP096215.1 See Comparison
CP063644.1 See Comparison
CP063615.1 See Comparison
NZ_CP041274.1 See Comparison
NZ_CP071925.1 See Comparison
NZ_CP072573.1 See Comparison
NZ_CP072583.1 See Comparison
NZ_CP072590.1 See Comparison
NZ_LR135423.1 See Comparison
NZ_KY595970.1 See Comparison
NZ_CP066658.1 See Comparison
NZ_CP041266.2 See Comparison
NZ_CP044323.1 See Comparison
NZ_CP064348.1 See Comparison
NZ_CP066407.1 See Comparison
NZ_CP059778.1 See Comparison
NZ_CP059827.1 See Comparison
NZ_CP059760.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore