Plasmid NZ_OU016042.1

Sequence

Nucleotide Information

Accession NZ_OU016042.1
Description Enterococcus faecium isolate USZ_VRE53_P46 plasmid pl5, complete sequence
Source refseq
Topology circular
Length 6174 bp
GC Content 0.36 %
Created at NCBI May 12, 2021



Assembly

Genome Data Information

Accession GCF_907177285.1
Assembly Coverage 43


Biosample

Curated Collection Information
Accession 19039095

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 47.4N;8.5E
Original Query Type coordinates
Coordinates (Lat/Lon) 47.40/8.50
Address 25b, Bauherrenstrasse, Höngg, Kreis 10, Zurich, District Zurich, Zurich, 8049, Switzerland

ECOSYSTEM
Original Query Homo sapiens,Superficial wound
Classification host_associated,wound
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diseased
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP096215.1 See Comparison
CP063630.1 See Comparison
CP063567.1 See Comparison
CP063644.1 See Comparison
CP063623.1 See Comparison
CP063615.1 See Comparison
NZ_CP093946.1 See Comparison
NZ_CP093950.1 See Comparison
NZ_CP085901.1 See Comparison
NZ_CP085913.1 See Comparison
NZ_OU015951.1 See Comparison
NZ_OU016032.1 See Comparison
NZ_CP072573.1 See Comparison
NZ_CP072583.1 See Comparison
NZ_CP072590.1 See Comparison
NZ_CP071925.1 See Comparison
NZ_CP044269.1 See Comparison
NZ_CP041274.1 See Comparison
NZ_CP040743.1 See Comparison
NZ_LR135313.1 See Comparison
NZ_LR135493.1 See Comparison
NZ_LR135328.1 See Comparison
NZ_LR135321.1 See Comparison
NZ_LR135423.1 See Comparison
NZ_CP131866.1 See Comparison
CP086648.1 See Comparison
NZ_CP041266.2 See Comparison
AP031282.1 See Comparison
NZ_KY595970.1 See Comparison
NZ_CP059778.1 See Comparison
NZ_CP046079.1 See Comparison
NZ_CP046170.1 See Comparison
NZ_CP066407.1 See Comparison
NZ_CP066393.1 See Comparison
NZ_CP064348.1 See Comparison
NZ_CP060864.1 See Comparison
NZ_CP044323.1 See Comparison
NZ_CP059789.1 See Comparison
NZ_CP059810.1 See Comparison
NZ_CP059760.1 See Comparison
NZ_CP059827.1 See Comparison
AP026646.1 See Comparison
NZ_CP119154.1 See Comparison
NZ_OP378690.1 See Comparison
NZ_CP114622.1 See Comparison
NZ_CP096215.1 See Comparison
CP063630.1 See Comparison
CP063567.1 See Comparison
CP063644.1 See Comparison
CP063623.1 See Comparison
CP063615.1 See Comparison
NZ_CP085901.1 See Comparison
NZ_CP093946.1 See Comparison
NZ_CP093950.1 See Comparison
NZ_CP085913.1 See Comparison
NZ_OU015951.1 See Comparison
NZ_OU016042.1 See Comparison
NZ_OU016032.1 See Comparison
NZ_CP071925.1 See Comparison
NZ_CP072573.1 See Comparison
NZ_CP072583.1 See Comparison
NZ_CP072590.1 See Comparison
NZ_CP040743.1 See Comparison
NZ_CP044269.1 See Comparison
NZ_CP041274.1 See Comparison
NZ_LR135328.1 See Comparison
NZ_LR135321.1 See Comparison
NZ_LR135423.1 See Comparison
NZ_LR135313.1 See Comparison
NZ_LR135493.1 See Comparison
NZ_KY595970.1 See Comparison
NZ_CP131866.1 See Comparison
CP086648.1 See Comparison
AP031282.1 See Comparison
NZ_CP059778.1 See Comparison
NZ_CP041266.2 See Comparison
NZ_CP046079.1 See Comparison
NZ_CP046170.1 See Comparison
NZ_CP066407.1 See Comparison
NZ_CP066393.1 See Comparison
NZ_CP064348.1 See Comparison
NZ_CP044323.1 See Comparison
NZ_CP060864.1 See Comparison
NZ_CP059810.1 See Comparison
NZ_CP059760.1 See Comparison
NZ_CP059827.1 See Comparison
NZ_OP378690.1 See Comparison
NZ_CP119154.1 See Comparison
NZ_CP059789.1 See Comparison
CP063630.1 See Comparison
NZ_CP096215.1 See Comparison
NZ_CP114622.1 See Comparison
AP026646.1 See Comparison
CP063567.1 See Comparison
CP063644.1 See Comparison
CP063623.1 See Comparison
CP063615.1 See Comparison
NZ_CP044269.1 See Comparison
NZ_CP093946.1 See Comparison
NZ_CP093950.1 See Comparison
NZ_CP085901.1 See Comparison
NZ_CP085913.1 See Comparison
NZ_OU015951.1 See Comparison
NZ_OU016032.1 See Comparison
NZ_CP072573.1 See Comparison
NZ_CP072583.1 See Comparison
NZ_CP072590.1 See Comparison
NZ_CP071925.1 See Comparison
NZ_CP040743.1 See Comparison
NZ_LR135313.1 See Comparison
NZ_CP041274.1 See Comparison
NZ_LR135493.1 See Comparison
NZ_LR135328.1 See Comparison
NZ_LR135321.1 See Comparison
NZ_LR135423.1 See Comparison
NZ_CP131866.1 See Comparison
AP031282.1 See Comparison
CP086648.1 See Comparison
NZ_KY595970.1 See Comparison
NZ_CP046079.1 See Comparison
NZ_CP041266.2 See Comparison
NZ_CP064348.1 See Comparison
NZ_CP046170.1 See Comparison
NZ_CP066407.1 See Comparison
NZ_CP066393.1 See Comparison
NZ_CP044323.1 See Comparison
NZ_CP059778.1 See Comparison
NZ_CP059789.1 See Comparison
NZ_CP060864.1 See Comparison
NZ_CP059810.1 See Comparison
NZ_CP059760.1 See Comparison
NZ_CP059827.1 See Comparison
NZ_CP096215.1 See Comparison
NZ_OP378690.1 See Comparison
NZ_CP114622.1 See Comparison
NZ_CP119154.1 See Comparison
AP026646.1 See Comparison
NZ_CP085901.1 See Comparison
CP063630.1 See Comparison
CP063567.1 See Comparison
CP063644.1 See Comparison
CP063623.1 See Comparison
CP063615.1 See Comparison
NZ_CP093946.1 See Comparison
NZ_CP093950.1 See Comparison
NZ_CP085913.1 See Comparison
NZ_CP044269.1 See Comparison
NZ_CP072573.1 See Comparison
NZ_CP072583.1 See Comparison
NZ_CP072590.1 See Comparison
NZ_OU015951.1 See Comparison
NZ_OU016032.1 See Comparison
NZ_CP071925.1 See Comparison
NZ_LR135313.1 See Comparison
NZ_CP040743.1 See Comparison
NZ_CP041274.1 See Comparison
NZ_LR135493.1 See Comparison
NZ_LR135328.1 See Comparison
NZ_LR135321.1 See Comparison
NZ_LR135423.1 See Comparison
NZ_CP131866.1 See Comparison
AP031282.1 See Comparison
CP086648.1 See Comparison
NZ_CP066407.1 See Comparison
NZ_KY595970.1 See Comparison
NZ_CP046079.1 See Comparison
NZ_CP046170.1 See Comparison
NZ_CP041266.2 See Comparison
NZ_CP066393.1 See Comparison
NZ_CP119154.1 See Comparison
NZ_CP064348.1 See Comparison
NZ_CP059789.1 See Comparison
NZ_CP059810.1 See Comparison
NZ_CP059760.1 See Comparison
NZ_CP059827.1 See Comparison
NZ_CP059778.1 See Comparison
NZ_CP060864.1 See Comparison
NZ_CP044323.1 See Comparison
NZ_CP114622.1 See Comparison
NZ_OP378690.1 See Comparison
CP063630.1 See Comparison
NZ_CP096215.1 See Comparison
AP026646.1 See Comparison
CP063567.1 See Comparison
CP063644.1 See Comparison
CP063623.1 See Comparison
CP063615.1 See Comparison
NZ_CP085901.1 See Comparison
NZ_CP093946.1 See Comparison
NZ_CP093950.1 See Comparison
NZ_CP085913.1 See Comparison
NZ_CP044269.1 See Comparison
NZ_CP071925.1 See Comparison
NZ_OU015951.1 See Comparison
NZ_OU016032.1 See Comparison
NZ_CP072573.1 See Comparison
NZ_CP072583.1 See Comparison
NZ_CP072590.1 See Comparison
NZ_LR135313.1 See Comparison
NZ_CP040743.1 See Comparison
NZ_CP041274.1 See Comparison
NZ_LR135493.1 See Comparison
NZ_LR135328.1 See Comparison
NZ_LR135321.1 See Comparison
NZ_LR135423.1 See Comparison
NZ_CP131866.1 See Comparison
AP031282.1 See Comparison
CP086648.1 See Comparison
NZ_KY595970.1 See Comparison
NZ_CP046079.1 See Comparison
NZ_CP041266.2 See Comparison
NZ_CP046170.1 See Comparison
AP026646.1 See Comparison
NZ_CP066407.1 See Comparison
NZ_CP066393.1 See Comparison
NZ_CP059789.1 See Comparison
NZ_CP059810.1 See Comparison
NZ_CP059760.1 See Comparison
NZ_CP059827.1 See Comparison
NZ_CP119154.1 See Comparison
NZ_CP114622.1 See Comparison
NZ_CP064348.1 See Comparison
NZ_CP059778.1 See Comparison
NZ_CP060864.1 See Comparison
NZ_CP044323.1 See Comparison
NZ_OP378690.1 See Comparison
CP063630.1 See Comparison
NZ_CP096215.1 See Comparison
CP063567.1 See Comparison
CP063644.1 See Comparison
CP063623.1 See Comparison
CP063615.1 See Comparison
NZ_CP085901.1 See Comparison
NZ_CP093946.1 See Comparison
NZ_CP093950.1 See Comparison
NZ_CP085913.1 See Comparison
NZ_CP044269.1 See Comparison
NZ_OU015951.1 See Comparison
NZ_OU016032.1 See Comparison
NZ_CP072573.1 See Comparison
NZ_CP072583.1 See Comparison
NZ_CP072590.1 See Comparison
NZ_CP071925.1 See Comparison
NZ_LR135313.1 See Comparison
NZ_CP040743.1 See Comparison
NZ_CP041274.1 See Comparison
NZ_LR135493.1 See Comparison
NZ_LR135328.1 See Comparison
NZ_LR135321.1 See Comparison
CP086648.1 See Comparison
NZ_CP131866.1 See Comparison
NZ_LR135423.1 See Comparison
NZ_KY595970.1 See Comparison
AP031282.1 See Comparison
NZ_CP064348.1 See Comparison
NZ_CP041266.2 See Comparison
NZ_CP046079.1 See Comparison
NZ_CP046170.1 See Comparison
NZ_CP066407.1 See Comparison
NZ_CP066393.1 See Comparison
NZ_CP060864.1 See Comparison
NZ_CP044323.1 See Comparison
NZ_OP378690.1 See Comparison
NZ_CP059778.1 See Comparison
NZ_CP119154.1 See Comparison
NZ_CP059789.1 See Comparison
NZ_CP059810.1 See Comparison
NZ_CP059760.1 See Comparison
NZ_CP059827.1 See Comparison
NZ_CP114622.1 See Comparison
AP026646.1 See Comparison


Identical Plasmids

100% Sequence Identity

  • Sequence
    • Accession: NZ_OU016032.1
    • Description: Enterococcus faecium isolate USZ_VRE67_P60 plasmid pl5, complete sequence
    • Source: refseq
    • Created at NCBI: May 12, 2021

  • Host Taxonomy
    Assigned Host: Enterococcus faecium (1352)
  • Biosample
    Accession: 19039099
  • GEOGRAPHICAL INFORMATION
    • Original Query: 47.4N;8.5E
    • Original Query Type: coordinates
    • Address: 25b, Bauherrenstrasse, Höngg, Kreis 10, Zurich, District Zurich, Zurich, 8049, Switzerland
    • Coordinates (Lat/Lon): 47.40/8.50
  • ECOSYSTEM
    • Original Query: Homo sapiens,Superficial wound
    • Classification: host_associated,wound
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: diseased
    • DOID/SYMP:
      • Disease (DOID:4 )
        • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

    • Visualization

    PNG JSON


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore