Plasmid NZ_CP046079.1

Sequence

Nucleotide Information

Accession NZ_CP046079.1
Description Enterococcus faecium strain VRE plasmid p1_03A17012, complete sequence
Source refseq
Topology circular
Length 6173 bp
GC Content 0.36 %
Created at NCBI Nov. 24, 2019



Assembly

Genome Data Information

Accession GCF_009697285.1
Assembly Coverage 73


Biosample

Curated Collection Information
Accession 13283502

PLASMID INFORMATION
Genotype VanA

GEOGRAPHICAL INFORMATION
Original Query 51.05N;114.07W
Original Query Type coordinates
Coordinates (Lat/Lon) 51.05/-114.07
Address The Westin, 320, 4 Avenue SW, Downtown Commercial Core, Calgary, Alberta, T2P 2S6, Canada

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query BSI
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_OU015951.1 See Comparison
NZ_OU016042.1 See Comparison
NZ_OU016032.1 See Comparison
NZ_CP072573.1 See Comparison
NZ_CP072583.1 See Comparison
NZ_CP072590.1 See Comparison
NZ_CP071925.1 See Comparison
NZ_CP044269.1 See Comparison
NZ_CP041274.1 See Comparison
NZ_CP040743.1 See Comparison
NZ_LR135313.1 See Comparison
NZ_LR135493.1 See Comparison
NZ_LR135328.1 See Comparison
NZ_LR135321.1 See Comparison
NZ_LR135423.1 See Comparison
NZ_CP152092.1 See Comparison
NZ_CP131866.1 See Comparison
CP086648.1 See Comparison
NZ_CP041266.2 See Comparison
AP027236.1 See Comparison
AP027224.1 See Comparison
AP031282.1 See Comparison
NZ_KY595970.1 See Comparison
NZ_CP066407.1 See Comparison
NZ_CP046170.1 See Comparison
NZ_CP066393.1 See Comparison
NZ_CP059760.1 See Comparison
NZ_CP059778.1 See Comparison
NZ_CP060864.1 See Comparison
NZ_CP064348.1 See Comparison
NZ_CP044323.1 See Comparison
NZ_CP059827.1 See Comparison
NZ_CP119154.1 See Comparison
NZ_CP059789.1 See Comparison
NZ_CP059810.1 See Comparison
NZ_CP114622.1 See Comparison
NZ_OP378690.1 See Comparison
NZ_CP096215.1 See Comparison
AP026646.1 See Comparison
NZ_CP085901.1 See Comparison
CP063630.1 See Comparison
CP063567.1 See Comparison
CP063644.1 See Comparison
CP063623.1 See Comparison
CP063615.1 See Comparison
NZ_CP093946.1 See Comparison
NZ_CP093950.1 See Comparison
NZ_CP085913.1 See Comparison
NZ_LR135313.1 See Comparison
NZ_CP071925.1 See Comparison
NZ_CP041274.1 See Comparison
NZ_LR135328.1 See Comparison
NZ_LR135321.1 See Comparison
NZ_OU015951.1 See Comparison
NZ_OU016042.1 See Comparison
NZ_OU016032.1 See Comparison
NZ_CP072573.1 See Comparison
NZ_CP072583.1 See Comparison
NZ_CP072590.1 See Comparison
NZ_CP044269.1 See Comparison
NZ_CP040743.1 See Comparison
NZ_LR135493.1 See Comparison
NZ_LR135423.1 See Comparison
CP086648.1 See Comparison
NZ_CP152092.1 See Comparison
NZ_CP131866.1 See Comparison
NZ_KY595970.1 See Comparison
AP027236.1 See Comparison
AP027224.1 See Comparison
AP031282.1 See Comparison
NZ_CP059827.1 See Comparison
NZ_CP041266.2 See Comparison
NZ_CP046170.1 See Comparison
NZ_CP066407.1 See Comparison
NZ_CP066393.1 See Comparison
NZ_CP064348.1 See Comparison
NZ_CP046079.1 See Comparison
NZ_CP059778.1 See Comparison
NZ_CP085901.1 See Comparison
NZ_CP060864.1 See Comparison
NZ_CP044323.1 See Comparison
NZ_OP378690.1 See Comparison
NZ_CP114622.1 See Comparison
NZ_CP093946.1 See Comparison
NZ_CP093950.1 See Comparison
NZ_CP059789.1 See Comparison
NZ_CP059810.1 See Comparison
NZ_CP059760.1 See Comparison
NZ_CP119154.1 See Comparison
AP026646.1 See Comparison
NZ_CP096215.1 See Comparison
CP063630.1 See Comparison
CP063567.1 See Comparison
CP063644.1 See Comparison
CP063623.1 See Comparison
CP063615.1 See Comparison
NZ_CP085913.1 See Comparison
NZ_OU015951.1 See Comparison
NZ_OU016042.1 See Comparison
NZ_OU016032.1 See Comparison
NZ_CP072573.1 See Comparison
NZ_CP071925.1 See Comparison
NZ_CP072583.1 See Comparison
NZ_CP072590.1 See Comparison
NZ_CP041274.1 See Comparison
NZ_CP044269.1 See Comparison
NZ_CP040743.1 See Comparison
NZ_LR135493.1 See Comparison
NZ_LR135313.1 See Comparison
NZ_LR135328.1 See Comparison
NZ_LR135321.1 See Comparison
NZ_CP152092.1 See Comparison
NZ_LR135423.1 See Comparison
CP086648.1 See Comparison
NZ_CP131866.1 See Comparison
AP027236.1 See Comparison
AP027224.1 See Comparison
AP031282.1 See Comparison
NZ_CP064348.1 See Comparison
NZ_CP041266.2 See Comparison
NZ_KY595970.1 See Comparison
NZ_CP046170.1 See Comparison
NZ_CP066407.1 See Comparison
NZ_CP066393.1 See Comparison
NZ_CP059789.1 See Comparison
NZ_CP059778.1 See Comparison
NZ_CP060864.1 See Comparison
NZ_CP044323.1 See Comparison
NZ_CP059810.1 See Comparison
NZ_CP059760.1 See Comparison
NZ_CP059827.1 See Comparison
AP026646.1 See Comparison
NZ_OP378690.1 See Comparison
NZ_CP114622.1 See Comparison
NZ_CP119154.1 See Comparison
NZ_OU015951.1 See Comparison
CP063630.1 See Comparison
CP063567.1 See Comparison
CP063644.1 See Comparison
CP063623.1 See Comparison
CP063615.1 See Comparison
NZ_OU016042.1 See Comparison
NZ_OU016032.1 See Comparison
NZ_CP096215.1 See Comparison
NZ_CP093946.1 See Comparison
NZ_CP093950.1 See Comparison
NZ_CP085901.1 See Comparison
NZ_CP085913.1 See Comparison
NZ_CP072573.1 See Comparison
NZ_CP072583.1 See Comparison
NZ_CP072590.1 See Comparison
NZ_CP044269.1 See Comparison
NZ_CP071925.1 See Comparison
NZ_LR135313.1 See Comparison
NZ_CP041274.1 See Comparison
NZ_CP040743.1 See Comparison
NZ_LR135493.1 See Comparison
NZ_LR135328.1 See Comparison
NZ_LR135321.1 See Comparison
NZ_LR135423.1 See Comparison
NZ_CP152092.1 See Comparison
NZ_CP131866.1 See Comparison
CP086648.1 See Comparison
NZ_KY595970.1 See Comparison
AP027236.1 See Comparison
AP027224.1 See Comparison
AP031282.1 See Comparison
NZ_CP046170.1 See Comparison
NZ_CP041266.2 See Comparison
NZ_CP066393.1 See Comparison
NZ_CP059778.1 See Comparison
NZ_CP066407.1 See Comparison
NZ_CP064348.1 See Comparison
NZ_CP119154.1 See Comparison
NZ_CP060864.1 See Comparison
NZ_CP044323.1 See Comparison
NZ_CP059789.1 See Comparison
NZ_CP059810.1 See Comparison
NZ_CP059760.1 See Comparison
NZ_CP059827.1 See Comparison
AP026646.1 See Comparison
NZ_CP114622.1 See Comparison
NZ_OP378690.1 See Comparison
NZ_CP093946.1 See Comparison
CP063630.1 See Comparison
CP063567.1 See Comparison
CP063644.1 See Comparison
CP063623.1 See Comparison
CP063615.1 See Comparison
NZ_CP096215.1 See Comparison
NZ_CP093950.1 See Comparison
NZ_CP085901.1 See Comparison
NZ_CP085913.1 See Comparison
NZ_CP040743.1 See Comparison
NZ_CP071925.1 See Comparison
NZ_CP041274.1 See Comparison
NZ_OU015951.1 See Comparison
NZ_OU016042.1 See Comparison
NZ_OU016032.1 See Comparison
NZ_CP072573.1 See Comparison
NZ_CP072583.1 See Comparison
NZ_CP072590.1 See Comparison
NZ_CP044269.1 See Comparison
NZ_LR135313.1 See Comparison
NZ_LR135493.1 See Comparison
NZ_LR135328.1 See Comparison
NZ_LR135321.1 See Comparison
NZ_CP041266.2 See Comparison
NZ_LR135423.1 See Comparison
NZ_CP152092.1 See Comparison
NZ_CP131866.1 See Comparison
CP086648.1 See Comparison
AP027236.1 See Comparison
AP027224.1 See Comparison
AP031282.1 See Comparison
NZ_KY595970.1 See Comparison
NZ_CP060864.1 See Comparison
NZ_CP066407.1 See Comparison
NZ_CP064348.1 See Comparison
NZ_CP046170.1 See Comparison
NZ_CP066393.1 See Comparison
NZ_CP044323.1 See Comparison
NZ_CP119154.1 See Comparison
NZ_CP059778.1 See Comparison
NZ_CP059789.1 See Comparison
NZ_CP059810.1 See Comparison
NZ_CP059760.1 See Comparison
NZ_CP059827.1 See Comparison
NZ_CP114622.1 See Comparison
NZ_OP378690.1 See Comparison
NZ_OU015951.1 See Comparison
NZ_CP096215.1 See Comparison
CP063630.1 See Comparison
CP063567.1 See Comparison
CP063644.1 See Comparison
CP063623.1 See Comparison
CP063615.1 See Comparison
NZ_CP085901.1 See Comparison
NZ_CP085913.1 See Comparison
AP026646.1 See Comparison
NZ_CP093946.1 See Comparison
NZ_CP093950.1 See Comparison
NZ_OU016042.1 See Comparison
NZ_OU016032.1 See Comparison
NZ_CP072573.1 See Comparison
NZ_CP072583.1 See Comparison
NZ_CP072590.1 See Comparison
NZ_CP044269.1 See Comparison
NZ_CP071925.1 See Comparison
NZ_LR135493.1 See Comparison
NZ_CP041274.1 See Comparison
NZ_CP040743.1 See Comparison
NZ_LR135328.1 See Comparison
NZ_LR135321.1 See Comparison
NZ_CP041266.2 See Comparison
NZ_LR135313.1 See Comparison
NZ_LR135423.1 See Comparison
NZ_CP152092.1 See Comparison
NZ_CP131866.1 See Comparison
CP086648.1 See Comparison
AP027236.1 See Comparison
AP027224.1 See Comparison
AP031282.1 See Comparison
NZ_KY595970.1 See Comparison
NZ_CP066407.1 See Comparison
NZ_CP046170.1 See Comparison
NZ_CP066393.1 See Comparison
NZ_CP064348.1 See Comparison
NZ_CP060864.1 See Comparison
NZ_CP044323.1 See Comparison
NZ_CP059789.1 See Comparison
NZ_CP059810.1 See Comparison
NZ_CP059760.1 See Comparison
NZ_CP059827.1 See Comparison
NZ_OP378690.1 See Comparison
NZ_CP059778.1 See Comparison
NZ_CP119154.1 See Comparison
NZ_CP093946.1 See Comparison
NZ_CP114622.1 See Comparison
NZ_CP096215.1 See Comparison
CP063630.1 See Comparison
CP063567.1 See Comparison
CP063644.1 See Comparison
CP063623.1 See Comparison
CP063615.1 See Comparison
AP026646.1 See Comparison
NZ_CP093950.1 See Comparison
NZ_CP085901.1 See Comparison
NZ_CP085913.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore