Plasmid NZ_CP012636.1

Sequence

Nucleotide Information

Accession NZ_CP012636.1
Description Escherichia coli strain SF-088 plasmid pSF-088-1, complete sequence
Source refseq
Topology circular
Length 149683 bp
GC Content 0.51 %
Created at NCBI Jan. 27, 2016



Assembly

Genome Data Information

Accession GCF_001280325.1
Assembly Coverage 90


Biosample

Curated Collection Information
Accession 4026225

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 37.755651N;122.404572W
Original Query Type coordinates
Coordinates (Lat/Lon) 37.76/-122.40
Address San Francisco General Hospital, 1001, Potrero Avenue, Mission District, San Francisco, California, 94158, United States

ECOSYSTEM
Original Query Homo sapiens,patient blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query bloodstream infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP095535.1 See Comparison
NZ_CP093319.1 See Comparison
NZ_OZ040193.1 See Comparison
NZ_OY754399.1 See Comparison
NZ_OM735810.1 See Comparison
NZ_CP122619.1 See Comparison
NZ_MW228449.1 See Comparison
NZ_CP026940.2 See Comparison
NZ_CP014489.1 See Comparison
NZ_CP115822.1 See Comparison
CP057193.1 See Comparison
CP057274.1 See Comparison
NZ_KP398867.1 See Comparison
CP063726.1 See Comparison
NZ_CP062858.1 See Comparison
NZ_CP093319.1 See Comparison
CP099042.1 See Comparison
CP099052.1 See Comparison
CP099122.1 See Comparison
NZ_CP095535.1 See Comparison
NZ_CP014489.1 See Comparison
NZ_MW228449.1 See Comparison
NZ_CP026940.2 See Comparison
NZ_CP012636.1 See Comparison
NZ_CP122619.1 See Comparison
NZ_OY754399.1 See Comparison
NZ_OM735810.1 See Comparison
NZ_KP398867.1 See Comparison
NZ_OZ040193.1 See Comparison
NZ_CP115822.1 See Comparison
CP057193.1 See Comparison
CP057274.1 See Comparison
NZ_CP115822.1 See Comparison
NZ_CP062858.1 See Comparison
CP099042.1 See Comparison
CP099052.1 See Comparison
CP099122.1 See Comparison
NZ_CP095535.1 See Comparison
CP063726.1 See Comparison
NZ_CP093319.1 See Comparison
NZ_MW228449.1 See Comparison
NZ_CP026940.2 See Comparison
NZ_CP014489.1 See Comparison
NZ_OY754399.1 See Comparison
NZ_OM735810.1 See Comparison
NZ_CP122619.1 See Comparison
NZ_OZ040193.1 See Comparison
CP057193.1 See Comparison
CP057274.1 See Comparison
NZ_CP062858.1 See Comparison
NZ_KP398867.1 See Comparison
NZ_CP014489.1 See Comparison
CP099042.1 See Comparison
CP099052.1 See Comparison
CP099122.1 See Comparison
NZ_CP095535.1 See Comparison
NZ_MW228449.1 See Comparison
NZ_CP026940.2 See Comparison
CP063726.1 See Comparison
NZ_CP093319.1 See Comparison
NZ_OY754399.1 See Comparison
NZ_OM735810.1 See Comparison
NZ_CP122619.1 See Comparison
CP099042.1 See Comparison
NZ_OZ040193.1 See Comparison
NZ_CP115822.1 See Comparison
CP057193.1 See Comparison
CP057274.1 See Comparison
NZ_KP398867.1 See Comparison
NZ_CP062858.1 See Comparison
CP063726.1 See Comparison
CP099052.1 See Comparison
CP099122.1 See Comparison
NZ_CP095535.1 See Comparison
NZ_CP122619.1 See Comparison
NZ_MW228449.1 See Comparison
NZ_CP026940.2 See Comparison
NZ_CP014489.1 See Comparison
NZ_CP093319.1 See Comparison
NZ_OY754399.1 See Comparison
NZ_OM735810.1 See Comparison
NZ_KP398867.1 See Comparison
NZ_OZ040193.1 See Comparison
NZ_CP115822.1 See Comparison
CP057193.1 See Comparison
CP057274.1 See Comparison
NZ_CP062858.1 See Comparison
CP063726.1 See Comparison
CP099042.1 See Comparison
CP099122.1 See Comparison
CP099052.1 See Comparison
NZ_CP093319.1 See Comparison
NZ_CP095535.1 See Comparison
NZ_MW228449.1 See Comparison
NZ_CP026940.2 See Comparison
NZ_CP014489.1 See Comparison
NZ_CP115822.1 See Comparison
NZ_OY754399.1 See Comparison
NZ_OM735810.1 See Comparison
NZ_OZ040193.1 See Comparison
NZ_CP122619.1 See Comparison
NZ_KP398867.1 See Comparison
CP057193.1 See Comparison
CP057274.1 See Comparison
CP099122.1 See Comparison
NZ_CP062858.1 See Comparison
CP099042.1 See Comparison
CP099052.1 See Comparison
CP063726.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore