Plasmid NZ_CP085770.1

Sequence

Nucleotide Information

Accession NZ_CP085770.1
Description Enterobacter hormaechei strain 49589CZ plasmid p49589CZ_3, complete sequence
Source refseq
Topology circular
Length 4921 bp
GC Content 0.55 %
Created at NCBI Nov. 3, 2021



Assembly

Genome Data Information

Accession GCF_020695685.1
Assembly Coverage 468


Biosample

Curated Collection Information
Accession 22377414

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 50.07N;14.43E
Original Query Type coordinates
Coordinates (Lat/Lon) 50.07/14.43
Address Legerova, New Town, Prague, obvod Praha 2, Prague, 121 32, Czechia

ECOSYSTEM
Original Query Homo sapiens,Decubitus swab
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Insufficiency of a bicuspid valve
DOID/SYMP
  • Bicuspid aortic valve disease (DOID:0080332 )
    • An aortic valve disease that is characterized by the presence of abnormal two-leaflet aortic valve in at least 2 first-degree relatives.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_AP026890.1 See Comparison
NZ_OX030733.1 See Comparison
OW968345.1 See Comparison
OW968044.1 See Comparison
NZ_CP049292.1 See Comparison
NZ_CP042575.1 See Comparison
NZ_CP010381.1 See Comparison
NZ_CP135257.1 See Comparison
NZ_CP056709.1 See Comparison
NZ_OP927730.1 See Comparison
OW968044.1 See Comparison
CP056478.1 See Comparison
NZ_CP045314.1 See Comparison
NZ_OX030733.1 See Comparison
CP047776.1 See Comparison
NZ_AP026890.1 See Comparison
OW968345.1 See Comparison
NZ_CP042575.1 See Comparison
NZ_CP085770.1 See Comparison
NZ_CP049292.1 See Comparison
NZ_CP010381.1 See Comparison
NZ_CP135257.1 See Comparison
NZ_OP927730.1 See Comparison
OW968345.1 See Comparison
CP047776.1 See Comparison
NZ_OX030733.1 See Comparison
NZ_CP056709.1 See Comparison
CP056478.1 See Comparison
NZ_CP045314.1 See Comparison
NZ_AP026890.1 See Comparison
NZ_OX030733.1 See Comparison
NZ_CP042575.1 See Comparison
NZ_OP927730.1 See Comparison
NZ_CP056709.1 See Comparison
OW968044.1 See Comparison
NZ_CP049292.1 See Comparison
NZ_CP010381.1 See Comparison
NZ_CP135257.1 See Comparison
CP056478.1 See Comparison
NZ_CP045314.1 See Comparison
CP047776.1 See Comparison
NZ_AP026890.1 See Comparison
OW968345.1 See Comparison
CP056478.1 See Comparison
OW968044.1 See Comparison
NZ_CP042575.1 See Comparison
NZ_OP927730.1 See Comparison
NZ_CP049292.1 See Comparison
NZ_CP010381.1 See Comparison
NZ_CP135257.1 See Comparison
NZ_CP056709.1 See Comparison
OW968044.1 See Comparison
NZ_AP026890.1 See Comparison
NZ_CP045314.1 See Comparison
CP047776.1 See Comparison
NZ_OX030733.1 See Comparison
OW968345.1 See Comparison
NZ_CP049292.1 See Comparison
NZ_CP042575.1 See Comparison
NZ_CP010381.1 See Comparison
NZ_CP135257.1 See Comparison
NZ_CP056709.1 See Comparison
NZ_OP927730.1 See Comparison
CP056478.1 See Comparison
CP047776.1 See Comparison
NZ_CP045314.1 See Comparison
NZ_CP045314.1 See Comparison
NZ_OX030733.1 See Comparison
OW968345.1 See Comparison
NZ_CP049292.1 See Comparison
NZ_CP042575.1 See Comparison
NZ_CP135257.1 See Comparison
NZ_CP056709.1 See Comparison
CP056478.1 See Comparison
NZ_AP026890.1 See Comparison
OW968044.1 See Comparison
NZ_CP010381.1 See Comparison
NZ_OP927730.1 See Comparison
CP047776.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore