Plasmid NZ_CP049292.1

Sequence

Nucleotide Information

Accession NZ_CP049292.1
Description Enterobacter hormaechei subsp. steigerwaltii strain 08-175 plasmid pHS08-175-3, complete sequence
Source refseq
Topology circular
Length 4934 bp
GC Content 0.55 %
Created at NCBI July 28, 2021



Assembly

Genome Data Information

Accession GCF_019355415.1
Assembly Coverage 656


Biosample

Curated Collection Information
Accession 14142282

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 31.2171N;121.44384E
Original Query Type coordinates
Coordinates (Lat/Lon) 31.22/121.44
Address Changshu Road, Hunanlu, Xuhui District, Shanghai, 200031, China

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Hydrocephalus
DOID/SYMP
  • Hydrocephalus (DOID:10908 )
    • A cerebral degeneration characterized by an abnormal accumulation of cerebrospinal fluid in the ventricles of the brain, leading to progressive enlargement of the head.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP085770.1 See Comparison
NZ_CP010381.1 See Comparison
NZ_CP042575.1 See Comparison
NZ_CP135257.1 See Comparison
OW968345.1 See Comparison
NZ_CP045314.1 See Comparison
NZ_AP026890.1 See Comparison
NZ_OX030733.1 See Comparison
OW968044.1 See Comparison
NZ_OP927730.1 See Comparison
NZ_CP056709.1 See Comparison
CP047776.1 See Comparison
NZ_OP927730.1 See Comparison
NZ_CP049292.1 See Comparison
NZ_CP010381.1 See Comparison
NZ_CP042575.1 See Comparison
NZ_CP135257.1 See Comparison
NZ_CP085770.1 See Comparison
NZ_AP026890.1 See Comparison
NZ_CP056709.1 See Comparison
CP047776.1 See Comparison
NZ_CP045314.1 See Comparison
NZ_CP010381.1 See Comparison
NZ_OX030733.1 See Comparison
OW968044.1 See Comparison
OW968345.1 See Comparison
NZ_CP085770.1 See Comparison
NZ_CP056709.1 See Comparison
NZ_CP042575.1 See Comparison
NZ_CP135257.1 See Comparison
NZ_OP927730.1 See Comparison
NZ_CP045314.1 See Comparison
NZ_AP026890.1 See Comparison
CP047776.1 See Comparison
OW968044.1 See Comparison
NZ_OX030733.1 See Comparison
OW968345.1 See Comparison
NZ_CP135257.1 See Comparison
NZ_CP085770.1 See Comparison
NZ_CP010381.1 See Comparison
NZ_CP042575.1 See Comparison
NZ_CP056709.1 See Comparison
NZ_OP927730.1 See Comparison
CP047776.1 See Comparison
NZ_CP045314.1 See Comparison
OW968345.1 See Comparison
NZ_AP026890.1 See Comparison
NZ_OX030733.1 See Comparison
NZ_CP010381.1 See Comparison
OW968044.1 See Comparison
NZ_CP085770.1 See Comparison
NZ_OP927730.1 See Comparison
NZ_CP042575.1 See Comparison
NZ_CP135257.1 See Comparison
NZ_OX030733.1 See Comparison
NZ_CP056709.1 See Comparison
NZ_CP045314.1 See Comparison
NZ_AP026890.1 See Comparison
CP047776.1 See Comparison
OW968345.1 See Comparison
NZ_CP056709.1 See Comparison
NZ_CP010381.1 See Comparison
NZ_CP135257.1 See Comparison
NZ_OP927730.1 See Comparison
OW968044.1 See Comparison
NZ_CP085770.1 See Comparison
NZ_CP042575.1 See Comparison
OW968345.1 See Comparison
NZ_CP045314.1 See Comparison
CP047776.1 See Comparison
NZ_AP026890.1 See Comparison
NZ_OX030733.1 See Comparison
OW968044.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore