Plasmid NZ_CP085773.1

Sequence

Nucleotide Information

Accession NZ_CP085773.1
Description Enterobacter hormaechei strain 49589CZ plasmid p49589CZ_VIM, complete sequence
Source refseq
Topology circular
Length 294454 bp
GC Content 0.46 %
Created at NCBI Nov. 3, 2021



Assembly

Genome Data Information

Accession GCF_020695685.1
Assembly Coverage 468


Biosample

Curated Collection Information
Accession 22377414

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 50.07N;14.43E
Original Query Type coordinates
Coordinates (Lat/Lon) 50.07/14.43
Address Legerova, New Town, Prague, obvod Praha 2, Prague, 121 32, Czechia

ECOSYSTEM
Original Query Homo sapiens,Decubitus swab
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Insufficiency of a bicuspid valve
DOID/SYMP
  • Bicuspid aortic valve disease (DOID:0080332 )
    • An aortic valve disease that is characterized by the presence of abnormal two-leaflet aortic valve in at least 2 first-degree relatives.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
rgitetRcopy
amrfinderplusblaVIM-4copy
amrfinderplusmerEcopy
amrfinderplusqacEdelta1copy
amrfinderplusqnrA1copy
amrfinderplusmerTcopy
rgiBrucella suis mprFcopy
amrfinderplusterZcopy
amrfinderplusterDcopy
amrfinderplusterWcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 312 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTNC_017500MOBH230576231166plus10010001092
repliconBX664015IncHI2A7153172160plus10010001164
replicon000340__KU353730rep_cluster_1088127213128175plus98.54610001701
relaxaseNC_012555_00231MOBH234470237613plus99.90510002133
mate-pair-formationNC_005211_00005MPF_F7407874863plus1001002.33e-172533
mate-pair-formationNC_009838_00006MPF_F7486676134plus99.5271000800
mate-pair-formationNC_005211_00012MPF_T8027582953plus10010001873
mate-pair-formationNC_021845_00017MPF_F100876102384plus99.6021000997
mate-pair-formationNC_005211_00030MPF_F102526103584plus1001000737
mate-pair-formationNC_005211_00200MPF_F228127229539minus1001000933
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 11 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2