Plasmid CP047776.1

Sequence

Nucleotide Information

Accession CP047776.1
Description Citrobacter freundii strain Cfr-13 plasmid pCfr13-3, complete sequence
Source insd
Topology circular
Length 4921 bp
GC Content 0.55 %
Created at NCBI Dec. 10, 2020



Biosample

Curated Collection Information
Accession 13747506

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 43.6532N;79.3832W
Original Query Type coordinates
Coordinates (Lat/Lon) 43.65/-79.38
Address Toronto City Hall, 100, Queen Street West, Financial District, Spadina—Fort York, Old Toronto, Toronto, Golden Horseshoe, Ontario, M5H 2N2, Canada

ECOSYSTEM
Original Query Rectal
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP049292.1 See Comparison
NZ_CP010381.1 See Comparison
NZ_CP042575.1 See Comparison
NZ_CP135257.1 See Comparison
NZ_OP927730.1 See Comparison
NZ_CP056709.1 See Comparison
CP056478.1 See Comparison
CP047776.1 See Comparison
NZ_CP045314.1 See Comparison
NZ_CP085770.1 See Comparison
NZ_OX030733.1 See Comparison
OW968345.1 See Comparison
OW968044.1 See Comparison
NZ_AP026890.1 See Comparison
NZ_CP049292.1 See Comparison
NZ_OP927730.1 See Comparison
NZ_CP010381.1 See Comparison
NZ_CP042575.1 See Comparison
NZ_CP135257.1 See Comparison
NZ_AP026890.1 See Comparison
NZ_CP045314.1 See Comparison
NZ_CP056709.1 See Comparison
CP056478.1 See Comparison
NZ_OX030733.1 See Comparison
OW968345.1 See Comparison
OW968044.1 See Comparison
NZ_CP085770.1 See Comparison
NZ_CP045314.1 See Comparison
NZ_CP049292.1 See Comparison
NZ_CP010381.1 See Comparison
NZ_CP042575.1 See Comparison
NZ_OP927730.1 See Comparison
NZ_CP056709.1 See Comparison
NZ_CP135257.1 See Comparison
CP056478.1 See Comparison
OW968044.1 See Comparison
NZ_AP026890.1 See Comparison
NZ_OX030733.1 See Comparison
OW968345.1 See Comparison
NZ_CP135257.1 See Comparison
NZ_CP085770.1 See Comparison
NZ_CP049292.1 See Comparison
NZ_CP010381.1 See Comparison
NZ_CP042575.1 See Comparison
NZ_CP135257.1 See Comparison
NZ_CP056709.1 See Comparison
NZ_OX030733.1 See Comparison
NZ_CP049292.1 See Comparison
NZ_CP010381.1 See Comparison
NZ_CP042575.1 See Comparison
NZ_OP927730.1 See Comparison
CP056478.1 See Comparison
NZ_CP045314.1 See Comparison
NZ_AP026890.1 See Comparison
OW968345.1 See Comparison
OW968044.1 See Comparison
NZ_CP085770.1 See Comparison
NZ_CP045314.1 See Comparison
NZ_OP927730.1 See Comparison
NZ_CP056709.1 See Comparison
CP056478.1 See Comparison
NZ_AP026890.1 See Comparison
NZ_OX030733.1 See Comparison
OW968345.1 See Comparison
OW968044.1 See Comparison
NZ_CP049292.1 See Comparison
NZ_CP135257.1 See Comparison
NZ_CP085770.1 See Comparison
NZ_CP042575.1 See Comparison
NZ_CP010381.1 See Comparison
NZ_OP927730.1 See Comparison
NZ_CP045314.1 See Comparison
CP056478.1 See Comparison
NZ_CP056709.1 See Comparison
NZ_CP085770.1 See Comparison
NZ_OX030733.1 See Comparison
OW968345.1 See Comparison
OW968044.1 See Comparison
NZ_AP026890.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore