Plasmid NZ_CP082980.1

Sequence

Nucleotide Information

Accession NZ_CP082980.1
Description Klebsiella pneumoniae strain BD-13 plasmid p2-BD-13-OXA48, complete sequence
Source refseq
Topology circular
Length 67100 bp
GC Content 0.51 %
Created at NCBI Dec. 11, 2021



Assembly

Genome Data Information

Accession GCF_021137635.1
Assembly Coverage 662.141


Biosample

Curated Collection Information
Accession 21016508

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 46.9321N;7.4199E
Original Query Type coordinates
Coordinates (Lat/Lon) 46.93/7.42
Address Labor Dr. Risch, Kohlenweg, Liebefeld, Köniz, Bern-Mittelland administrative district, Bernese Mittelland administrative region, Bern, 3097, Switzerland

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP083013.1 See Comparison
NZ_CP082980.1 See Comparison
NZ_CP018452.1 See Comparison
NZ_CP018449.1 See Comparison
NZ_CP143502.1 See Comparison
NZ_CP068942.1 See Comparison
NZ_CP068895.1 See Comparison
NZ_CP068900.1 See Comparison
NZ_CP068874.1 See Comparison
NZ_CP068924.1 See Comparison
NZ_CP068901.1 See Comparison
NZ_CP068924.1 See Comparison
NZ_CP143502.1 See Comparison
NZ_CP068874.1 See Comparison
NZ_CP083013.1 See Comparison
NZ_CP018452.1 See Comparison
NZ_CP018449.1 See Comparison
NZ_CP068942.1 See Comparison
NZ_CP068895.1 See Comparison
NZ_CP068901.1 See Comparison
NZ_CP068900.1 See Comparison
NZ_CP018452.1 See Comparison
NZ_CP083013.1 See Comparison
NZ_CP018449.1 See Comparison
NZ_CP143502.1 See Comparison
NZ_CP068924.1 See Comparison
NZ_CP068942.1 See Comparison
NZ_CP068895.1 See Comparison
NZ_CP068874.1 See Comparison
NZ_CP068901.1 See Comparison
NZ_CP068924.1 See Comparison
NZ_CP068900.1 See Comparison
NZ_CP068942.1 See Comparison
NZ_CP068895.1 See Comparison
NZ_CP083013.1 See Comparison
NZ_CP018452.1 See Comparison
NZ_CP018449.1 See Comparison
NZ_CP143502.1 See Comparison
NZ_CP068874.1 See Comparison
NZ_CP143502.1 See Comparison
NZ_CP068900.1 See Comparison
NZ_CP068901.1 See Comparison
NZ_CP083013.1 See Comparison
NZ_CP018452.1 See Comparison
NZ_CP018449.1 See Comparison
NZ_CP068924.1 See Comparison
NZ_CP068942.1 See Comparison
NZ_CP068895.1 See Comparison
NZ_CP068874.1 See Comparison
NZ_CP068942.1 See Comparison
NZ_CP068900.1 See Comparison
NZ_CP068901.1 See Comparison
NZ_CP143502.1 See Comparison
NZ_CP083013.1 See Comparison
NZ_CP018452.1 See Comparison
NZ_CP018449.1 See Comparison
NZ_CP068895.1 See Comparison
NZ_CP068900.1 See Comparison
NZ_CP068924.1 See Comparison
NZ_CP068874.1 See Comparison
NZ_CP068901.1 See Comparison
NZ_CP068942.1 See Comparison
NZ_CP083013.1 See Comparison
NZ_CP018452.1 See Comparison
NZ_CP018449.1 See Comparison
NZ_CP143502.1 See Comparison
NZ_CP068895.1 See Comparison
NZ_CP068874.1 See Comparison
NZ_CP068900.1 See Comparison
NZ_CP068924.1 See Comparison
NZ_CP068901.1 See Comparison


Identical Plasmids

100% Sequence Identity


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusblaOXA-48copy
rgiAPH(6)-Idcopy
rgiAPH(6)-Idcopy
rgiQnrS4copy
rgiQnrS1copy
amrfinderplusblaCTX-M-14copy
amrfinderplusaph(3')-VIbcopy
amrfinderplusaph(3'')-Ibcopy
amrfinderplusaph(3'')-Ibcopy
PGAGrepAcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 97 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
repliconU27345IncL/M6643167100plus99.55210001221
relaxaseNC_004464_00056MOBP4415846134plus99.39310001373
mate-pair-formationNC_005246_00057MPF_I4669047424plus99.592952.01e-162505
mate-pair-formationNC_019063_00094MPF_I5214752656plus99.4121001.74e-108346
mate-pair-formationNC_019344_00078MPF_I5332254032plus98.7341005.1300000000000006e-129408
mate-pair-formationNC_004464_00066MPF_I5404455192plus99.4781000646
mate-pair-formationNC_004464_00068MPF_I5656857269plus94.4441001.39e-127404
mate-pair-formationNC_019154_00069MPF_I5729657823plus1001008.71e-100321
mate-pair-formationNC_005246_00069MPF_I5784358229plus1001002.86e-65220
mate-pair-formationNC_004464_00073MPF_I6181663021plus99.7511000781
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 10 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2