Plasmid NZ_CP018452.1

Sequence

Nucleotide Information

Accession NZ_CP018452.1
Description Klebsiella pneumoniae strain Kp_Goe_71070 plasmid pKp_Goe_070-2, complete sequence
Source refseq
Topology circular
Length 67100 bp
GC Content 0.51 %
Created at NCBI Dec. 19, 2016



Assembly

Genome Data Information

Accession GCF_001902515.1
Assembly Coverage 123


Biosample

Curated Collection Information
Accession 5412456

PLASMID INFORMATION
Genotype MLST ST101

GEOGRAPHICAL INFORMATION
Original Query 51.53919016N;9.91156249E
Original Query Type coordinates
Coordinates (Lat/Lon) 51.54/9.91
Address Königsstieg, Egelsberg, Weststadt, Göttingen, Landkreis Göttingen, Lower Saxony, 37081, Germany

ECOSYSTEM
Original Query Homo sapiens,urine sample
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 31
Host-associated Sex male

DISEASE
Original Query Urinary tract infection
DOID/SYMP
  • Urinary tract infection (DOID:0080784 )
    • An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP143502.1 See Comparison
NZ_CP068942.1 See Comparison
NZ_CP068895.1 See Comparison
NZ_CP068924.1 See Comparison
NZ_CP068874.1 See Comparison
NZ_CP068900.1 See Comparison
NZ_CP068901.1 See Comparison
NZ_CP083013.1 See Comparison
NZ_CP082980.1 See Comparison
NZ_CP018449.1 See Comparison
NZ_CP068942.1 See Comparison
NZ_CP143502.1 See Comparison
NZ_CP068895.1 See Comparison
NZ_CP068924.1 See Comparison
NZ_CP068874.1 See Comparison
NZ_CP143502.1 See Comparison
NZ_CP068900.1 See Comparison
NZ_CP068901.1 See Comparison
NZ_CP083013.1 See Comparison
NZ_CP082980.1 See Comparison
NZ_CP018449.1 See Comparison
NZ_CP068924.1 See Comparison
NZ_CP068874.1 See Comparison
NZ_CP083013.1 See Comparison
NZ_CP068901.1 See Comparison
NZ_CP082980.1 See Comparison
NZ_CP068942.1 See Comparison
NZ_CP068895.1 See Comparison
NZ_CP068900.1 See Comparison
NZ_CP018449.1 See Comparison
NZ_CP068942.1 See Comparison
NZ_CP143502.1 See Comparison
NZ_CP068895.1 See Comparison
NZ_CP068874.1 See Comparison
NZ_CP068901.1 See Comparison
NZ_CP068924.1 See Comparison
NZ_CP083013.1 See Comparison
NZ_CP068900.1 See Comparison
NZ_CP082980.1 See Comparison
NZ_CP143502.1 See Comparison
NZ_CP018449.1 See Comparison
NZ_CP068942.1 See Comparison
NZ_CP068895.1 See Comparison
NZ_CP068924.1 See Comparison
NZ_CP068874.1 See Comparison
NZ_CP068900.1 See Comparison
NZ_CP068901.1 See Comparison
NZ_CP083013.1 See Comparison
NZ_CP082980.1 See Comparison
NZ_CP068942.1 See Comparison
NZ_CP018452.1 See Comparison
NZ_CP018449.1 See Comparison
NZ_CP143502.1 See Comparison
NZ_CP068895.1 See Comparison
NZ_CP068924.1 See Comparison
NZ_CP068874.1 See Comparison
NZ_CP068900.1 See Comparison
NZ_CP068901.1 See Comparison
NZ_CP143502.1 See Comparison
NZ_CP083013.1 See Comparison
NZ_CP082980.1 See Comparison
NZ_CP018449.1 See Comparison
NZ_CP068942.1 See Comparison
NZ_CP068895.1 See Comparison
NZ_CP068924.1 See Comparison
NZ_CP068874.1 See Comparison
NZ_CP068900.1 See Comparison
NZ_CP068901.1 See Comparison
NZ_CP018449.1 See Comparison
NZ_CP083013.1 See Comparison
NZ_CP082980.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
rgiQnrS4copy
rgiQnrS1copy
amrfinderplusaph(3'')-Ibcopy
amrfinderplusblaCTX-M-14copy
amrfinderplusaph(3'')-Ibcopy
amrfinderplusaph(3')-VIbcopy
amrfinderplusblaOXA-48copy
rgiAPH(6)-Idcopy
rgiAPH(6)-Idcopy
PGAGDUF4942 domain-containing proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 97 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseNC_004464_00056MOBP4606648042minus99.39310001373
repliconU27345IncL/M2503125769minus99.59410001349
mate-pair-formationNC_004464_00073MPF_I2917930384minus99.7511000781
mate-pair-formationNC_005246_00069MPF_I3397134357minus1001002.86e-65220
mate-pair-formationNC_019154_00069MPF_I3437734904minus1001008.71e-100321
mate-pair-formationNC_004464_00068MPF_I3493135632minus94.4441001.39e-127404
mate-pair-formationNC_004464_00066MPF_I3700838156minus99.4781000646
mate-pair-formationNC_019344_00078MPF_I3816838878minus98.7341005.1300000000000006e-129408
mate-pair-formationNC_019063_00094MPF_I3954440053minus99.4121001.74e-108346
mate-pair-formationNC_005246_00057MPF_I4477645510minus99.592952.01e-162505
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 10 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2