Plasmid NZ_CP068924.1

Sequence

Nucleotide Information

Accession NZ_CP068924.1
Description Klebsiella pneumoniae strain RIVM_C018979 plasmid pRIVM_C018979_1, complete sequence
Source refseq
Topology circular
Length 67091 bp
GC Content 0.51 %
Created at NCBI Feb. 3, 2021



Biosample

Curated Collection Information
Accession 17304683

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Netherlands
Original Query Type name
Coordinates (Lat/Lon) 52.24/5.53
Address Netherlands

ECOSYSTEM
Original Query Homo sapiens,Plasmid
Classification cell_culture,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP143502.1 See Comparison
NZ_CP018452.1 See Comparison
NZ_CP068942.1 See Comparison
NZ_CP068895.1 See Comparison
NZ_CP068900.1 See Comparison
NZ_CP068901.1 See Comparison
NZ_CP082980.1 See Comparison
NZ_CP068874.1 See Comparison
NZ_CP083013.1 See Comparison
NZ_CP018449.1 See Comparison
NZ_CP068874.1 See Comparison
NZ_CP143502.1 See Comparison
NZ_CP068900.1 See Comparison
NZ_CP068901.1 See Comparison
NZ_CP068942.1 See Comparison
NZ_CP068895.1 See Comparison
NZ_CP083013.1 See Comparison
NZ_CP082980.1 See Comparison
NZ_CP018452.1 See Comparison
NZ_CP018449.1 See Comparison
NZ_CP068942.1 See Comparison
NZ_CP143502.1 See Comparison
NZ_CP068895.1 See Comparison
NZ_CP082980.1 See Comparison
NZ_CP068924.1 See Comparison
NZ_CP068874.1 See Comparison
NZ_CP068900.1 See Comparison
NZ_CP068901.1 See Comparison
NZ_CP018452.1 See Comparison
NZ_CP083013.1 See Comparison
NZ_CP018449.1 See Comparison
NZ_CP068901.1 See Comparison
NZ_CP143502.1 See Comparison
NZ_CP068874.1 See Comparison
NZ_CP068942.1 See Comparison
NZ_CP068895.1 See Comparison
NZ_CP083013.1 See Comparison
NZ_CP068900.1 See Comparison
NZ_CP068874.1 See Comparison
NZ_CP018452.1 See Comparison
NZ_CP018449.1 See Comparison
NZ_CP143502.1 See Comparison
NZ_CP082980.1 See Comparison
NZ_CP068942.1 See Comparison
NZ_CP068901.1 See Comparison
NZ_CP068895.1 See Comparison
NZ_CP068900.1 See Comparison
NZ_CP068942.1 See Comparison
NZ_CP082980.1 See Comparison
NZ_CP018452.1 See Comparison
NZ_CP018449.1 See Comparison
NZ_CP083013.1 See Comparison
NZ_CP143502.1 See Comparison
NZ_CP068895.1 See Comparison
NZ_CP068874.1 See Comparison
NZ_CP083013.1 See Comparison
NZ_CP068901.1 See Comparison
NZ_CP068900.1 See Comparison
NZ_CP082980.1 See Comparison
NZ_CP018452.1 See Comparison
NZ_CP018449.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore