Plasmid NZ_CP080231.1

Sequence

Nucleotide Information

Accession NZ_CP080231.1
Description Escherichia coli O141:H4 strain P13-6 plasmid pP136-8, complete sequence
Source refseq
Topology circular
Length 5128 bp
GC Content 0.49 %
Created at NCBI Aug. 2, 2021



Assembly

Genome Data Information

Accession GCF_019431295.1
Assembly Coverage 50


Biosample

Curated Collection Information
Accession 20003587

PLASMID INFORMATION
BIOSAMPLE_pathotype STEC

GEOGRAPHICAL INFORMATION
Original Query 46.00N;2.00E
Original Query Type coordinates
Coordinates (Lat/Lon) 46.00/2.00
Address Route de Petillat, Pétillat, Saint-Sulpice-les-Champs, Aubusson, Creuse, Nouvelle-Aquitaine, Metropolitan France, 23480, France

ECOSYSTEM
Original Query Sus scrofa domesticus,clinical sample
Classification host_associated
Host-associated Taxon

DISEASE
Original Query Edema disease
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.
  • Edema (SYMP:0000538 )
    • A skin and integumentary tissue symptom that is characterized by an abnormal excess accumulation of serous fluid in connective tissue or in a serous cavity.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP122806.1 See Comparison
NZ_CP122730.1 See Comparison
NZ_CP122716.1 See Comparison
NZ_CP122682.1 See Comparison
NZ_CP122635.1 See Comparison
NZ_CP122824.1 See Comparison
CP122671.1 See Comparison
CP122734.1 See Comparison
CP122757.1 See Comparison
CP057728.1 See Comparison
CP057291.1 See Comparison
CP057285.1 See Comparison
CP055673.1 See Comparison
NZ_CP058793.1 See Comparison
CP100034.1 See Comparison
CP099297.1 See Comparison
NZ_CP121364.1 See Comparison
CP057728.1 See Comparison
NZ_CP122806.1 See Comparison
NZ_CP122730.1 See Comparison
NZ_CP122716.1 See Comparison
NZ_CP122682.1 See Comparison
NZ_CP122635.1 See Comparison
NZ_CP122824.1 See Comparison
CP122671.1 See Comparison
CP122734.1 See Comparison
CP122757.1 See Comparison
CP057291.1 See Comparison
CP057285.1 See Comparison
CP122671.1 See Comparison
CP055673.1 See Comparison
CP100034.1 See Comparison
NZ_CP122806.1 See Comparison
NZ_CP122730.1 See Comparison
NZ_CP122716.1 See Comparison
NZ_CP122682.1 See Comparison
NZ_CP122635.1 See Comparison
NZ_CP122824.1 See Comparison
CP099297.1 See Comparison
NZ_CP121364.1 See Comparison
NZ_CP058793.1 See Comparison
CP122734.1 See Comparison
CP122757.1 See Comparison
CP055673.1 See Comparison
CP057728.1 See Comparison
NZ_CP058793.1 See Comparison
CP057291.1 See Comparison
CP057285.1 See Comparison
CP099297.1 See Comparison
NZ_CP121364.1 See Comparison
NZ_CP058793.1 See Comparison
NZ_CP122806.1 See Comparison
NZ_CP122730.1 See Comparison
NZ_CP122716.1 See Comparison
NZ_CP122682.1 See Comparison
NZ_CP122635.1 See Comparison
NZ_CP122824.1 See Comparison
CP057728.1 See Comparison
CP057291.1 See Comparison
CP057285.1 See Comparison
CP100034.1 See Comparison
CP122671.1 See Comparison
CP122734.1 See Comparison
CP122757.1 See Comparison
CP055673.1 See Comparison
CP099297.1 See Comparison
NZ_CP121364.1 See Comparison
CP100034.1 See Comparison
CP057291.1 See Comparison
NZ_CP080231.1 See Comparison
NZ_CP122806.1 See Comparison
NZ_CP122730.1 See Comparison
NZ_CP122716.1 See Comparison
NZ_CP122682.1 See Comparison
NZ_CP122635.1 See Comparison
NZ_CP122824.1 See Comparison
CP122671.1 See Comparison
CP122734.1 See Comparison
CP122757.1 See Comparison
CP057285.1 See Comparison
CP055673.1 See Comparison
CP057728.1 See Comparison
NZ_CP122806.1 See Comparison
CP099297.1 See Comparison
NZ_CP121364.1 See Comparison
NZ_CP058793.1 See Comparison
CP122671.1 See Comparison
CP122734.1 See Comparison
CP122757.1 See Comparison
CP100034.1 See Comparison
NZ_CP122730.1 See Comparison
NZ_CP122716.1 See Comparison
NZ_CP122682.1 See Comparison
NZ_CP122635.1 See Comparison
NZ_CP122824.1 See Comparison
CP057728.1 See Comparison
CP057291.1 See Comparison
CP057285.1 See Comparison
CP099297.1 See Comparison
CP055673.1 See Comparison
NZ_CP121364.1 See Comparison
CP100034.1 See Comparison
NZ_CP058793.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore