Plasmid NZ_CP121364.1

Sequence

Nucleotide Information

Accession	NZ_CP121364.1
Description	Escherichia coli strain rl0044 plasmid pVP446, complete sequence
Source	refseq
Topology	circular
Length	5128 bp
GC Content	0.49 %
Created at NCBI	April 12, 2023

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_029674645.1
Assembly Coverage	142.36

Biosample

Curated Collection Information

Accession	34068129

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	Switzerland
Original Query Type	name
Coordinates (Lat/Lon)	46.80/8.23
Address	Switzerland

ECOSYSTEM

Original Query	Sus scrofa domesticus,feces,feces
Classification	fecal,gastrointestinal_system,host_associated
Host-associated Taxon	Sus scrofa (9825)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP122806.1	See Comparison
NZ_CP122730.1	See Comparison
NZ_CP122716.1	See Comparison
NZ_CP122682.1	See Comparison
NZ_CP122635.1	See Comparison
NZ_CP122824.1	See Comparison
CP122671.1	See Comparison
CP122734.1	See Comparison
CP122757.1	See Comparison
CP057728.1	See Comparison
CP057291.1	See Comparison
CP057285.1	See Comparison
CP055673.1	See Comparison
CP099297.1	See Comparison
NZ_CP058793.1	See Comparison
CP100034.1	See Comparison
NZ_CP080231.1	See Comparison
NZ_CP122806.1	See Comparison
NZ_CP122730.1	See Comparison
NZ_CP122716.1	See Comparison
NZ_CP122682.1	See Comparison
NZ_CP122635.1	See Comparison
NZ_CP122824.1	See Comparison
CP057728.1	See Comparison
CP122671.1	See Comparison
CP122734.1	See Comparison
CP122757.1	See Comparison
CP057291.1	See Comparison
CP057285.1	See Comparison
NZ_CP122806.1	See Comparison
CP055673.1	See Comparison
NZ_CP058793.1	See Comparison
CP099297.1	See Comparison
CP100034.1	See Comparison
NZ_CP080231.1	See Comparison
NZ_CP122730.1	See Comparison
NZ_CP122716.1	See Comparison
NZ_CP122682.1	See Comparison
NZ_CP122635.1	See Comparison
NZ_CP122824.1	See Comparison
CP057728.1	See Comparison
CP122671.1	See Comparison
CP122734.1	See Comparison
CP122757.1	See Comparison
CP057291.1	See Comparison
CP057285.1	See Comparison
CP099297.1	See Comparison
CP055673.1	See Comparison
NZ_CP058793.1	See Comparison
NZ_CP080231.1	See Comparison
CP122671.1	See Comparison
CP122734.1	See Comparison
CP122757.1	See Comparison
CP057728.1	See Comparison
CP099297.1	See Comparison
CP100034.1	See Comparison
NZ_CP122806.1	See Comparison
NZ_CP122730.1	See Comparison
NZ_CP122716.1	See Comparison
NZ_CP122682.1	See Comparison
NZ_CP122635.1	See Comparison
NZ_CP122824.1	See Comparison
CP057291.1	See Comparison
CP057285.1	See Comparison
CP055673.1	See Comparison
NZ_CP058793.1	See Comparison
CP100034.1	See Comparison
CP057291.1	See Comparison
NZ_CP080231.1	See Comparison
CP122671.1	See Comparison
CP122734.1	See Comparison
CP122757.1	See Comparison
NZ_CP122806.1	See Comparison
NZ_CP122730.1	See Comparison
NZ_CP122716.1	See Comparison
NZ_CP122682.1	See Comparison
NZ_CP122635.1	See Comparison
NZ_CP122824.1	See Comparison
CP057285.1	See Comparison
CP055673.1	See Comparison
CP057728.1	See Comparison
NZ_CP058793.1	See Comparison
CP099297.1	See Comparison
CP100034.1	See Comparison
NZ_CP122806.1	See Comparison
NZ_CP080231.1	See Comparison
CP122671.1	See Comparison
CP122734.1	See Comparison
CP122757.1	See Comparison
NZ_CP122730.1	See Comparison
NZ_CP122716.1	See Comparison
NZ_CP122682.1	See Comparison
NZ_CP122635.1	See Comparison
NZ_CP122824.1	See Comparison
CP055673.1	See Comparison
CP057728.1	See Comparison
NZ_CP080231.1	See Comparison
CP057291.1	See Comparison
CP057285.1	See Comparison
NZ_CP058793.1	See Comparison
CP099297.1	See Comparison
NZ_CP121364.1	See Comparison
CP100034.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore