Plasmid NZ_CP080232.1

Sequence

Nucleotide Information

Accession NZ_CP080232.1
Description Escherichia coli O141:H4 strain P13-6 plasmid pP136-9, complete sequence
Source refseq
Topology circular
Length 3126 bp
GC Content 0.45 %
Created at NCBI Aug. 2, 2021



Assembly

Genome Data Information

Accession GCF_019431295.1
Assembly Coverage 50


Biosample

Curated Collection Information
Accession 20003587

PLASMID INFORMATION
BIOSAMPLE_pathotype STEC

GEOGRAPHICAL INFORMATION
Original Query 46.00N;2.00E
Original Query Type coordinates
Coordinates (Lat/Lon) 46.00/2.00
Address Route de Petillat, Pétillat, Saint-Sulpice-les-Champs, Aubusson, Creuse, Nouvelle-Aquitaine, Metropolitan France, 23480, France

ECOSYSTEM
Original Query Sus scrofa domesticus,clinical sample
Classification host_associated
Host-associated Taxon

DISEASE
Original Query Edema disease
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.
  • Edema (SYMP:0000538 )
    • A skin and integumentary tissue symptom that is characterized by an abnormal excess accumulation of serous fluid in connective tissue or in a serous cavity.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGhypothetical proteincopy
PGAGmobAcopy
PGAGRop family plasmid primer RNA-binding proteincopy
PGAGreplication initiation proteincopy
PGAGhypothetical proteincopy
MOB-typerMOBFcopy
MOB-typerMOB_unknowncopy
MOB-typerrep_cluster_2350copy
SourceElement NameDisplaySequenceFavorite
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTNC_019102MOB_unknown9191156minus1001003.49e-121440
repliconCP041342_00001rep_cluster_235014231927plus86.338953.85e-154551
relaxaseCP019897MOBF590910minus99.0651002.13e-62210
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 3 of 3 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2