Plasmid CP057728.1

Sequence

Nucleotide Information

Accession CP057728.1
Description Escherichia coli strain RHB16-C19 plasmid pRHB16-C19_4, complete sequence
Source insd
Topology circular
Length 5128 bp
GC Content 0.49 %
Created at NCBI July 29, 2020



Assembly

Genome Data Information

Accession GCA_013896095.1
Assembly Coverage 78.8658


Biosample

Curated Collection Information
Accession 15148139

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query culture,Pooled pig faecal samples collected from floor of farm
Classification cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP122806.1 See Comparison
NZ_CP122730.1 See Comparison
NZ_CP122716.1 See Comparison
NZ_CP122682.1 See Comparison
NZ_CP122635.1 See Comparison
NZ_CP122824.1 See Comparison
CP122671.1 See Comparison
CP122757.1 See Comparison
CP057291.1 See Comparison
CP057285.1 See Comparison
CP055673.1 See Comparison
NZ_CP058793.1 See Comparison
CP099297.1 See Comparison
NZ_CP121364.1 See Comparison
NZ_CP080231.1 See Comparison
NZ_CP122806.1 See Comparison
NZ_CP122730.1 See Comparison
NZ_CP122716.1 See Comparison
NZ_CP122682.1 See Comparison
NZ_CP122635.1 See Comparison
NZ_CP122824.1 See Comparison
CP099297.1 See Comparison
CP122671.1 See Comparison
CP122757.1 See Comparison
CP057291.1 See Comparison
CP057285.1 See Comparison
CP055673.1 See Comparison
NZ_CP121364.1 See Comparison
CP055673.1 See Comparison
CP122671.1 See Comparison
CP122757.1 See Comparison
CP057728.1 See Comparison
NZ_CP058793.1 See Comparison
NZ_CP080231.1 See Comparison
NZ_CP122806.1 See Comparison
NZ_CP122730.1 See Comparison
NZ_CP122716.1 See Comparison
NZ_CP122682.1 See Comparison
NZ_CP122635.1 See Comparison
NZ_CP122824.1 See Comparison
CP099297.1 See Comparison
CP057291.1 See Comparison
CP057285.1 See Comparison
NZ_CP121364.1 See Comparison
CP122671.1 See Comparison
NZ_CP058793.1 See Comparison
NZ_CP080231.1 See Comparison
NZ_CP122806.1 See Comparison
CP122757.1 See Comparison
NZ_CP122730.1 See Comparison
CP055673.1 See Comparison
NZ_CP122716.1 See Comparison
NZ_CP122682.1 See Comparison
NZ_CP122635.1 See Comparison
NZ_CP122824.1 See Comparison
NZ_CP122806.1 See Comparison
CP057291.1 See Comparison
CP057285.1 See Comparison
CP099297.1 See Comparison
NZ_CP121364.1 See Comparison
NZ_CP058793.1 See Comparison
NZ_CP080231.1 See Comparison
NZ_CP122730.1 See Comparison
NZ_CP122716.1 See Comparison
NZ_CP122682.1 See Comparison
NZ_CP122635.1 See Comparison
NZ_CP122824.1 See Comparison
NZ_CP058793.1 See Comparison
CP122671.1 See Comparison
CP122757.1 See Comparison
CP055673.1 See Comparison
CP057291.1 See Comparison
CP057285.1 See Comparison
CP099297.1 See Comparison
NZ_CP121364.1 See Comparison
NZ_CP080231.1 See Comparison
CP122671.1 See Comparison
NZ_CP122806.1 See Comparison
NZ_CP122730.1 See Comparison
NZ_CP122716.1 See Comparison
NZ_CP122682.1 See Comparison
NZ_CP122635.1 See Comparison
NZ_CP122824.1 See Comparison
CP122757.1 See Comparison
CP057291.1 See Comparison
CP055673.1 See Comparison
CP057285.1 See Comparison
CP099297.1 See Comparison
NZ_CP121364.1 See Comparison
NZ_CP058793.1 See Comparison
NZ_CP080231.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore